View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_high_238 (Length: 235)
Name: NF20384_high_238
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_high_238 |
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| [»] scaffold1248 (1 HSPs) |
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| [»] scaffold0952 (1 HSPs) |
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| [»] scaffold0717 (1 HSPs) |
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| [»] scaffold1158 (1 HSPs) |
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Alignment Details
Target: scaffold1248 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: scaffold1248
Description:
Target: scaffold1248; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 359 - 138
Alignment:
| Q |
1 |
ttcccatttattacttctaaaaaatttagttattgttcccactctaagtaactctattatnnnnnnnnnnnnnnnnnctattagaagatccctattctaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
359 |
ttcccatttattacttctaaaaaatttagttattgttcccactctaagtaactctattataaaaaataaaataaaaactattagaagatccctattctaa |
260 |
T |
|
| Q |
101 |
tatgataaaaggttcaatttcataacttaaaattcaattcttttgcattgcaggagccgttgcaaaatgaatgaggcctttatcacagatattggaaaag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
259 |
tatgataaaaggttcaatttcataacttaaaattcaattcttttgcattgcaggagccgttgcaaaatgaatgaggcctttatcatagatattggaaaag |
160 |
T |
|
| Q |
201 |
aactttcagcgagcttgttgtt |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
159 |
aactttcagcgagcttgttgtt |
138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0952 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: scaffold0952
Description:
Target: scaffold0952; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 1954 - 2175
Alignment:
| Q |
1 |
ttcccatttattacttctaaaaaatttagttattgttcccactctaagtaactctattatnnnnnnnnnnnnnnnnnctattagaagatccctattctaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
1954 |
ttcccatttattacttctaaaaaatttagttattgttcccactctaagtaactctattataaaaaataaaataaaaactattagaagatccctattctaa |
2053 |
T |
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| Q |
101 |
tatgataaaaggttcaatttcataacttaaaattcaattcttttgcattgcaggagccgttgcaaaatgaatgaggcctttatcacagatattggaaaag |
200 |
Q |
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| T |
2054 |
tatgataaaaggttcaatttcataacttaaaattcaattcttttgcattgcaggagccgttgcaaaatgaatgaggcctttatcacagacattggaaaag |
2153 |
T |
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| Q |
201 |
aactttcagcgagcttgttgtt |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
2154 |
aactttcagcgagcttgttgtt |
2175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0717 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: scaffold0717
Description:
Target: scaffold0717; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 3359 - 3138
Alignment:
| Q |
1 |
ttcccatttattacttctaaaaaatttagttattgttcccactctaagtaactctattatnnnnnnnnnnnnnnnnnctattagaagatccctattctaa |
100 |
Q |
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||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
3359 |
ttcccattttttacttctaaaaaatttagttattgttcctactctaagtaactctattataacaaataaaataaaaactattagaagatccctattctaa |
3260 |
T |
|
| Q |
101 |
tatgataaaaggttcaatttcataacttaaaattcaattcttttgcattgcaggagccgttgcaaaatgaatgaggcctttatcacagatattggaaaag |
200 |
Q |
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||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
3259 |
tatgataaaagattcaatttcataacttaaaattcaattcttatgcattgcaggagccgttgcaaaatgaatgaggcctttatcagagatattggaaaag |
3160 |
T |
|
| Q |
201 |
aactttcagcgagcttgttgtt |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
3159 |
aactttcagcgagcttgttgtt |
3138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 92; Significance: 8e-45; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 127 - 222
Target Start/End: Complemental strand, 20535634 - 20535539
Alignment:
| Q |
127 |
ttaaaattcaattcttttgcattgcaggagccgttgcaaaatgaatgaggcctttatcacagatattggaaaagaactttcagcgagcttgttgtt |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
20535634 |
ttaaaattcaattcttttgcattgcaggagccgttgcaaaatgaatgaggcctttatcagagatattggaaaagaactttcagcgagcttgttgtt |
20535539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 20535807 - 20535680
Alignment:
| Q |
1 |
ttcccatttattacttctaaaaaatttagttattgttcccactctaagtaactctattatnnnnnnnnnnnnnnnnnctattagaagatccctattctaa |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
20535807 |
ttcccattttttacttctaaaaaatttagttattgttcccactctaagtaactctattataaaaaataaaataaaaactattagaagatccctattctaa |
20535708 |
T |
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| Q |
101 |
tatgataaaaggttcaatttcataactt |
128 |
Q |
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||||||||||| |||||||||||||||| |
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| T |
20535707 |
tatgataaaagcttcaatttcataactt |
20535680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1158 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold1158
Description:
Target: scaffold1158; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 129 - 222
Target Start/End: Original strand, 638 - 731
Alignment:
| Q |
129 |
aaaattcaattcttttgcattgcaggagccgttgcaaaatgaatgaggcctttatcacagatattggaaaagaactttcagcgagcttgttgtt |
222 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||| ||| || |||||||||||| |
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| T |
638 |
aaaattcaattcttttgcattgcaggagccgttacaaaatgaatgaggcctttattagagatattggaaaagaaatttgagtgagcttgttgtt |
731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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