View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20384_high_24 (Length: 575)
Name: NF20384_high_24
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_high_24 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 4 - 556
Target Start/End: Original strand, 38582210 - 38582762
Alignment:
| Q |
4 |
tggagaagcaaagggtcaaagtagcttgtttaagctaaaccatgaagggacacaaactcaagaaaaaacacaaacacaagnnnnnnntgatgacttgttg |
103 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
38582210 |
tggagatgaaaagggtcaaagtagcttgtttaagctaaaccatgaagggacacaaactcaagaaaaaacacaaacacaagaaaaaaatgatgacttgttg |
38582309 |
T |
|
| Q |
104 |
gatacaatggattacacacctgcctcaaagaatccaccaatccataattaaagtctcctagttttannnnnnnnnnctttccttagaggacaatttttgg |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
38582310 |
gatacaatggattacacacctgcctcaaagaatccaccaatccataattaaagtctcctagttttatttattttttctttccttagaggacaatttttgg |
38582409 |
T |
|
| Q |
204 |
taggnnnnnnnngcaccaatccacagtgcttaattaccctgcaattctatctatgagcttcaatgtaaagatatattttgaactttgaagtagggaaatc |
303 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38582410 |
taggaaacaaaagcaccaatccagagtgcttaattaccctgcaattctatctatgagcttcaatgtaaagatatattttgaactttgaagtagggaaatc |
38582509 |
T |
|
| Q |
304 |
cacacttaaatcacagatttttgtggaggaaaaagcaccagtcttgttgatgcttaatcatatatttagaactatcacttgtaaatatatagttttggaa |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38582510 |
cacacttaaatcacagatttttgtggaggaaaaagcaccagtcttgttgatgcttaatcatatatttagaactatcacttgtaaatatatagttttggaa |
38582609 |
T |
|
| Q |
404 |
gttatgagagtgtgaggggagcatatataaacataggatttgtcaaagttttattaatatattgctcaatcaccaaaaacagatgcttagtatatttacc |
503 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38582610 |
gttatgagagtgtgaggggagcatatataaacataggatttgtcaaagttttattaatatattgctcaatcaccaaaaacagatgcttagtatatttacc |
38582709 |
T |
|
| Q |
504 |
ttaccttatgcagacataagtttttgatatctctgattctcatatgttagtgc |
556 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38582710 |
ttaccttatgcagacataagtttttgatatctctgattctcatatgttagtgc |
38582762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University