View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20384_high_243 (Length: 234)

Name: NF20384_high_243
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20384_high_243
NF20384_high_243
[»] chr1 (34 HSPs)
chr1 (1-234)||(42882863-42883095)
chr1 (67-231)||(3517852-3518016)
chr1 (68-234)||(14587617-14587783)
chr1 (68-234)||(22858456-22858622)
chr1 (71-234)||(44496187-44496350)
chr1 (68-234)||(29961095-29961261)
chr1 (66-234)||(12700817-12700985)
chr1 (72-231)||(48965168-48965327)
chr1 (73-234)||(49851417-49851578)
chr1 (67-234)||(33801059-33801226)
chr1 (66-234)||(37951998-37952164)
chr1 (69-234)||(44757805-44757969)
chr1 (73-234)||(38860386-38860546)
chr1 (97-233)||(46597408-46597543)
chr1 (98-234)||(52632625-52632761)
chr1 (68-162)||(5750132-5750226)
chr1 (68-234)||(41723228-41723392)
chr1 (101-234)||(50262195-50262327)
chr1 (66-162)||(3475604-3475700)
chr1 (67-231)||(11952692-11952850)
chr1 (68-162)||(22335240-22335334)
chr1 (97-233)||(12528179-12528314)
chr1 (67-162)||(39597915-39598009)
chr1 (72-162)||(29947023-29947112)
chr1 (63-231)||(23984307-23984476)
chr1 (69-132)||(41086119-41086182)
chr1 (69-132)||(41090887-41090950)
chr1 (73-234)||(27216506-27216668)
chr1 (73-162)||(7564922-7565011)
chr1 (66-162)||(10313428-10313524)
chr1 (66-162)||(18271969-18272065)
chr1 (66-162)||(18276623-18276719)
chr1 (147-199)||(41086183-41086235)
chr1 (147-199)||(41090951-41091003)
[»] chr4 (33 HSPs)
chr4 (66-234)||(35158414-35158583)
chr4 (66-234)||(45029294-45029462)
chr4 (67-234)||(45228787-45228954)
chr4 (69-234)||(28781044-28781209)
chr4 (68-231)||(40727723-40727886)
chr4 (67-234)||(52417207-52417373)
chr4 (68-234)||(9036373-9036538)
chr4 (71-234)||(51538346-51538509)
chr4 (66-234)||(1602485-1602650)
chr4 (73-234)||(38551536-38551697)
chr4 (68-234)||(55136364-55136530)
chr4 (93-234)||(30003334-30003475)
chr4 (105-234)||(43842151-43842280)
chr4 (82-233)||(31092818-31092969)
chr4 (72-234)||(16451638-16451800)
chr4 (65-199)||(45458036-45458170)
chr4 (69-234)||(16023572-16023737)
chr4 (65-234)||(56463915-56464084)
chr4 (68-234)||(38218541-38218707)
chr4 (66-231)||(2016063-2016227)
chr4 (71-234)||(15543108-15543272)
chr4 (66-234)||(35320163-35320331)
chr4 (68-231)||(45924302-45924465)
chr4 (68-230)||(4190146-4190308)
chr4 (67-232)||(49374021-49374186)
chr4 (68-234)||(28311159-28311325)
chr4 (78-219)||(168832-168973)
chr4 (145-229)||(33280862-33280946)
chr4 (145-234)||(6963235-6963324)
chr4 (69-126)||(33280802-33280859)
chr4 (201-234)||(45461326-45461359)
chr4 (66-162)||(55614187-55614282)
chr4 (67-162)||(47986018-47986113)
[»] chr8 (20 HSPs)
chr8 (67-234)||(40105522-40105689)
chr8 (69-234)||(8240261-8240426)
chr8 (69-232)||(39318871-39319034)
chr8 (68-234)||(32946776-32946943)
chr8 (68-234)||(6346999-6347165)
chr8 (67-234)||(29544103-29544268)
chr8 (67-231)||(20091264-20091428)
chr8 (65-231)||(43098816-43098981)
chr8 (73-232)||(32337516-32337675)
chr8 (67-234)||(39260566-39260715)
chr8 (97-232)||(13546459-13546594)
chr8 (97-232)||(13677879-13678014)
chr8 (65-234)||(35684289-35684460)
chr8 (72-234)||(42132141-42132301)
chr8 (65-162)||(37098093-37098190)
chr8 (69-162)||(12065-12158)
chr8 (101-234)||(23144376-23144508)
chr8 (73-234)||(586679-586841)
chr8 (73-234)||(627081-627244)
chr8 (105-162)||(23421288-23421345)
[»] chr7 (17 HSPs)
chr7 (68-234)||(46254564-46254730)
chr7 (67-231)||(36312358-36312520)
chr7 (68-231)||(34848151-34848314)
chr7 (73-234)||(35794180-35794341)
chr7 (69-234)||(44862716-44862881)
chr7 (97-231)||(43269989-43270123)
chr7 (68-234)||(43457885-43458051)
chr7 (144-234)||(33950704-33950794)
chr7 (66-231)||(14816923-14817087)
chr7 (66-231)||(15263919-15264083)
chr7 (66-162)||(38257771-38257867)
chr7 (66-162)||(15032880-15032976)
chr7 (151-234)||(25529377-25529460)
chr7 (66-162)||(26791696-26791792)
chr7 (68-162)||(7255738-7255832)
chr7 (66-114)||(29332640-29332688)
chr7 (66-162)||(35585399-35585495)
[»] chr5 (27 HSPs)
chr5 (67-234)||(12723368-12723535)
chr5 (68-234)||(18808677-18808843)
chr5 (68-234)||(16513867-16514033)
chr5 (67-234)||(12784851-12785018)
chr5 (67-227)||(13822353-13822512)
chr5 (110-231)||(3556361-3556482)
chr5 (73-232)||(26278744-26278902)
chr5 (65-231)||(8197103-8197269)
chr5 (66-233)||(8734391-8734557)
chr5 (67-234)||(8301036-8301203)
chr5 (67-214)||(15858584-15858731)
chr5 (67-234)||(37030522-37030689)
chr5 (71-231)||(2606258-2606419)
chr5 (68-161)||(29047362-29047455)
chr5 (66-159)||(37012562-37012655)
chr5 (68-162)||(5344078-5344172)
chr5 (66-162)||(1711555-1711651)
chr5 (168-234)||(38679726-38679792)
chr5 (73-234)||(25977399-25977560)
chr5 (68-231)||(37883125-37883291)
chr5 (73-176)||(9715624-9715727)
chr5 (111-234)||(27114045-27114168)
chr5 (73-163)||(8551244-8551334)
chr5 (67-149)||(13654679-13654761)
chr5 (73-133)||(11720287-11720347)
chr5 (187-231)||(37012646-37012690)
chr5 (72-117)||(24203168-24203213)
[»] chr2 (20 HSPs)
chr2 (67-234)||(38707488-38707655)
chr2 (68-234)||(15911481-15911647)
chr2 (66-234)||(45116781-45116948)
chr2 (68-231)||(38207188-38207345)
chr2 (68-232)||(6402581-6402745)
chr2 (67-199)||(17304588-17304720)
chr2 (68-138)||(17138040-17138110)
chr2 (73-231)||(7943013-7943169)
chr2 (67-196)||(44754001-44754130)
chr2 (69-231)||(13278394-13278560)
chr2 (73-230)||(18137299-18137454)
chr2 (73-234)||(31994345-31994505)
chr2 (183-234)||(17137983-17138034)
chr2 (67-231)||(1210202-1210370)
chr2 (77-131)||(1114501-1114555)
chr2 (195-234)||(30490954-30490993)
chr2 (68-162)||(5464720-5464814)
chr2 (67-162)||(12287041-12287136)
chr2 (71-136)||(24167093-24167158)
chr2 (201-234)||(44759923-44759956)
[»] chr3 (27 HSPs)
chr3 (66-234)||(10509495-10509663)
chr3 (68-234)||(32529503-32529670)
chr3 (67-234)||(227328-227493)
chr3 (67-215)||(53814648-53814796)
chr3 (69-234)||(39586272-39586437)
chr3 (73-234)||(41193990-41194151)
chr3 (73-231)||(49166380-49166538)
chr3 (68-234)||(149025-149191)
chr3 (67-234)||(40936914-40937081)
chr3 (78-231)||(39353013-39353166)
chr3 (66-232)||(26502467-26502633)
chr3 (67-176)||(36403011-36403120)
chr3 (65-166)||(47375060-47375161)
chr3 (115-234)||(41174565-41174683)
chr3 (67-159)||(47646649-47646741)
chr3 (110-234)||(6936215-6936340)
chr3 (71-234)||(31765470-31765634)
chr3 (69-162)||(49440606-49440699)
chr3 (187-234)||(47646732-47646779)
chr3 (68-162)||(44207925-44208019)
chr3 (71-137)||(21980261-21980327)
chr3 (71-137)||(22002692-22002758)
chr3 (192-234)||(47013990-47014032)
chr3 (66-162)||(16481091-16481186)
chr3 (67-162)||(9126732-9126827)
chr3 (67-162)||(9134839-9134934)
chr3 (71-117)||(18875737-18875783)
[»] chr6 (10 HSPs)
chr6 (66-232)||(31271046-31271211)
chr6 (68-234)||(31723145-31723308)
chr6 (68-231)||(303452-303615)
chr6 (65-234)||(9305231-9305400)
chr6 (68-223)||(438743-438898)
chr6 (68-178)||(31318227-31318337)
chr6 (66-162)||(29435798-29435894)
chr6 (62-162)||(34949228-34949328)
chr6 (169-213)||(16395116-16395160)
chr6 (66-156)||(480019-480108)
[»] scaffold1301 (1 HSPs)
scaffold1301 (181-234)||(1472-1525)


Alignment Details
Target: chr1 (Bit Score: 152; Significance: 1e-80; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 42883095 - 42882863
Alignment:
Q  1 tatcttgggtcaatgggcttttgagcaattttttgtgagaaatnnnnnnncacaccaattagtgatagactattacttttcccaccctgctacctcctcg 100  Q
    |||||||||||||||| ||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  42883095 tatcttgggtcaatggacttttgagcaattttttgtgagaaataaaaaa-cacaccaattagtgatagactattacttttcccaccttgctgcctcctcg 42882997  T
Q  101 cgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagttattttcggaaacagaaattcggaccagatgttg 200  Q
    |||| ||| ||||||||||||||||||||||| | || || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||     
T  42882996 cgcgtcctgcaaaatttactaaaatacccctgtttcggatcacataatctggaccagattgttagttattttcggaaacagaaattcggaccagatgtta 42882897  T
Q  201 tgtaattttctgtgtctttctttgatgtcaaggg 234  Q
    ||||||||| | | ||||||||||||||||||||    
T  42882896 tgtaattttttttatctttctttgatgtcaaggg 42882863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 67 - 231
Target Start/End: Complemental strand, 3518016 - 3517852
Alignment:
Q  67 agactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagt 166  Q
    ||||||||||||||||||||||||| ||| ||||||| |||| |||||||||||||||||| ||||||||| || |||||||| ||| |||||||| |||    
T  3518016 agactattacttttcccaccctgctgccttctcgcgcaccctgcaaaatttactaaaatactcctggtccggatcacataatccggatcagattgttagt 3517917  T
Q  167 tattttcggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaa 231  Q
     |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  3517916 gatttccggaaacagaaattcggaccagatgttatgtaattttctgtgtctttctttgatgtcaa 3517852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 68 - 234
Target Start/End: Complemental strand, 14587783 - 14587617
Alignment:
Q  68 gactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagtt 167  Q
    |||||||||||||||||||||||| ||| ||| ||| |||| |||||||||||||||||||| ||||||| ||||||||||| ||| |||||||| |||     
T  14587783 gactattacttttcccaccctgctgccttctcacgcaccctgcaaaatttactaaaatacccatggtccggattacataatccggatcagattgttagtg 14587684  T
Q  168 attttcggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaaggg 234  Q
    |||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  14587683 atttccggaaacagaaatccggaccagatgttatgtaattttctgtgtctttctttgatgtcaaggg 14587617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 68 - 234
Target Start/End: Original strand, 22858456 - 22858622
Alignment:
Q  68 gactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagtt 167  Q
    |||||||||||||| || | |||| ||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||| |||     
T  22858456 gactattacttttctcatcttgctgcctcctcgcgcaccctacaaaatttactaaaatacctctggtccggattacataatctggaacagattgttagtg 22858555  T
Q  168 attttcggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaaggg 234  Q
    | |||| |||||| |||| || |||||||||| ||||||||||||||||||||||||||||||||||    
T  22858556 actttcagaaacataaatccgaaccagatgttatgtaattttctgtgtctttctttgatgtcaaggg 22858622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 71 - 234
Target Start/End: Original strand, 44496187 - 44496350
Alignment:
Q  71 tattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagttatt 170  Q
    |||||||||||||||  |||| ||| |||||||||||| ||||||||| ||||||| |||||||||||||||  ||||| |||||||||||| ||| |||    
T  44496187 tattacttttcccactatgctgccttctcgcgcgccctgcaaaatttattaaaataaccctggtccgaattatgtaatccggaccagattgttagtgatt 44496286  T
Q  171 ttcggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaaggg 234  Q
    | ||||||||||||| | ||||||||||| ||||||||| |||||||||||||| |||||||||    
T  44496287 tccggaaacagaaatccagaccagatgttatgtaattttatgtgtctttctttgttgtcaaggg 44496350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 68 - 234
Target Start/End: Original strand, 29961095 - 29961261
Alignment:
Q  68 gactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagtt 167  Q
    |||||||| ||||||||||||||| ||| ||||||| || | | |||||||||||||||||||| ||||| ||||||||||| |||||||||||| |||     
T  29961095 gactattatttttcccaccctgctgccttctcgcgcaccatgcgaaatttactaaaatacccctagtccggattacataatccggaccagattgttagtg 29961194  T
Q  168 attttcggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaaggg 234  Q
    |||| |||||||||||||  |||||||||||| |||  |||||| ||||||||||||||||||||||    
T  29961195 atttccggaaacagaaatctggaccagatgttatgtgtttttctttgtctttctttgatgtcaaggg 29961261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 66 - 234
Target Start/End: Complemental strand, 12700985 - 12700817
Alignment:
Q  66 tagactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaag 165  Q
    ||||||||||||||| |||  ||||| |||||||||| ||||| ||||||||||||||||| | ||||| || ||||||||||||||   ||||||| ||    
T  12700985 tagactattactttttccattctgctgcctcctcgcgtgccctgcaaaatttactaaaatatctctggttcggattacataatctgggttagattgttag 12700886  T
Q  166 ttattttcggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaaggg 234  Q
    | |||| ||||||||||||| ||||||||||||| ||||||||| |||||||||||||||| |||||||    
T  12700885 tgatttccggaaacagaaatccggaccagatgttatgtaattttttgtgtctttctttgatatcaaggg 12700817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 72 - 231
Target Start/End: Complemental strand, 48965327 - 48965168
Alignment:
Q  72 attacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagttattt 171  Q
    |||||||||  ||||||||| ||| || |||||||||  |||||||||||||||||| ||| | || ||||||||||| |||||||||||| ||| ||||    
T  48965327 attacttttttcaccctgctgccttcttgcgcgccctgtaaaatttactaaaataccactgattcggattacataatccggaccagattgttagtgattt 48965228  T
Q  172 tcggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaa 231  Q
      |||||||||||| |||||||||| || |||||||||||||||||||||||||||||||    
T  48965227 ctggaaacagaaatccggaccagatattatgtaattttctgtgtctttctttgatgtcaa 48965168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 73 - 234
Target Start/End: Original strand, 49851417 - 49851578
Alignment:
Q  73 ttacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagttatttt 172  Q
    ||||||||||||||||||| ||| |||||||||||| |||||||| | |||||||| ||||||||||||| |||||  ||| |||||||| ||| || |     
T  49851417 ttacttttcccaccctgctgccttctcgcgcgcccttcaaaatttccaaaaataccgctggtccgaattatataattcggatcagattgttagtgatatc 49851516  T
Q  173 cggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaaggg 234  Q
    |||||| |||||||||||||||||||| |||  |||| ||||||||||||| ||||||||||    
T  49851517 cggaaaaagaaattcggaccagatgttatgtgcttttttgtgtctttctttaatgtcaaggg 49851578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 67 - 234
Target Start/End: Original strand, 33801059 - 33801226
Alignment:
Q  67 agactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagt 166  Q
    |||||||||||||||||||||| || ||| |||||||| |||   |  || || ||||||||| | ||||| |||  |||||| ||| |||||||| |||    
T  33801059 agactattacttttcccaccctactgccttctcgcgcgtcctgtgattttgaccaaaataccctttgtccggattgtataatccggatcagattgttagt 33801158  T
Q  167 tattttcggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaaggg 234  Q
     |||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  33801159 gatttccggaaacagaaattcggaccagatattatgtaattttctgtgtctttctttgatgtcaaggg 33801226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 66 - 234
Target Start/End: Original strand, 37951998 - 37952164
Alignment:
Q  66 tagactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaag 165  Q
    ||||||||||||||||| |||||||| ||| |||| || |||| ||||||||||||||||||   |||| || ||||||||||| | | |||||||| ||    
T  37951998 tagactattacttttcc-accctgctgccttctcgtgcaccctgcaaaatttactaaaatacat-tggttcggattacataatccgaatcagattgttag 37952095  T
Q  166 ttattttcggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaaggg 234  Q
    | |||| || ||||||||||  ||||||||| || ||||||||||||||||||||||||||||||||||    
T  37952096 tgatttccgaaaacagaaatctggaccagatattatgtaattttctgtgtctttctttgatgtcaaggg 37952164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 69 - 234
Target Start/End: Complemental strand, 44757969 - 44757805
Alignment:
Q  69 actattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagtta 168  Q
    |||||||||||||||||| |||| ||| |||||||||||| ||||| || |  |||||||||| || |  ||||| ||||| | |||||||||| |||      
T  44757969 actattacttttcccaccatgctgccttctcgcgcgccctgcaaaaatttcataaatacccctagttcagattacgtaatccgaaccagattgttagtg- 44757871  T
Q  169 ttttcggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaaggg 234  Q
    ||| ||||||||||||| ||| ||||||||| ||||||||||||||| ||||||||||||||||||    
T  44757870 tttccggaaacagaaatccgggccagatgttatgtaattttctgtgtatttctttgatgtcaaggg 44757805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 73 - 234
Target Start/End: Original strand, 38860386 - 38860546
Alignment:
Q  73 ttacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagttatttt 172  Q
    ||||||||||||||||  | ||| ||||| |||||| |||||||| | ||||||||||| || || |||| |||||| ||||| |||||| || | |||     
T  38860386 ttacttttcccaccctatttccttctcgcacgccctgcaaaatttccaaaaataccccttgttcggattatataatccggacccgattgttag-tgtttc 38860484  T
Q  173 cggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaaggg 234  Q
    ||||||  ||||| ||||||||||||| ||| ||||| |||||||||||| |||||||||||    
T  38860485 cggaaaacgaaatccggaccagatgttatgtgattttttgtgtctttcttagatgtcaaggg 38860546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 97 - 233
Target Start/End: Complemental strand, 46597543 - 46597408
Alignment:
Q  97 ctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagttattttcggaaacagaaattcggaccagat 196  Q
    ||||||| |||| ||||||||| |||||||||| || | || ||||||||||| ||| ||| |||| ||| |||| || ||||| |||| || | |||||    
T  46597543 ctcgcgcaccctgcaaaatttattaaaatacccttgattcggattacataatc-ggatcaggttgttagtgatttccgaaaacataaatccgaatcagat 46597445  T
Q  197 gttgtgtaattttctgtgtctttctttgatgtcaagg 233  Q
    ||| ||||||||||||||||||| |||||||||||||    
T  46597444 gttatgtaattttctgtgtctttatttgatgtcaagg 46597408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 98 - 234
Target Start/End: Complemental strand, 52632761 - 52632625
Alignment:
Q  98 tcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagttattttcggaaacagaaattcggaccagatg 197  Q
    ||||||||||| |||||||| | ||||||||||||||||  |||| |||||| ||| |||||||| ||| |||| ||||||   |||||||||||||||     
T  52632761 tcgcgcgccctgcaaaattttcaaaaatacccctggtccagattatataatccggatcagattgttagtgatttccggaaaattaaattcggaccagata 52632662  T
Q  198 ttgtgtaattttctgtgtctttctttgatgtcaaggg 234  Q
    || ||   ||||  |||||||||||||||||||||||    
T  52632661 ttatgcgctttttggtgtctttctttgatgtcaaggg 52632625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 68 - 162
Target Start/End: Complemental strand, 5750226 - 5750132
Alignment:
Q  68 gactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgt 162  Q
    ||||||||||||||||||||||   ||| |||| ||||||| ||||| || | ||||||||||||||||| ||||| ||||| ||||||||||||    
T  5750226 gactattacttttcccaccctgtagccttctcgggcgccctgcaaaaattccaaaaatacccctggtccggattacgtaatccggaccagattgt 5750132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 68 - 234
Target Start/End: Original strand, 41723228 - 41723392
Alignment:
Q  68 gactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagtt 167  Q
    ||||||||||||||| ||||| |  ||| |||||||||| ||  |  || || ||||||||||| ||||| |||  |||||| ||| |||||||| |||     
T  41723228 gactattacttttcc-accctacagccttctcgcgcgccttatgattttgaccaaaataccccttgtccggattgtataatccggatcagattgttagtg 41723326  T
Q  168 attttcggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaaggg 234  Q
    ||||| ||||||||||||  |||||||||||| | ||||||| ||||||||| ||| ||||||||||    
T  41723327 atttttggaaacagaaatctggaccagatgttatttaattttttgtgtcttt-ttttatgtcaaggg 41723392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 101 - 234
Target Start/End: Complemental strand, 50262327 - 50262195
Alignment:
Q  101 cgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagttattttcggaaacagaaattcggaccagatgttg 200  Q
    |||||||| |||||||| | ||||||||||| ||| | |||| |||||  ||| | |||||| |||  ||| || |||  ||||| |||||||||||||     
T  50262327 cgcgccctgcaaaatttccaaaaatacccctagtctggattatataattcggatccgattgttagtg-tttccgaaaaacgaaatccggaccagatgtta 50262229  T
Q  201 tgtaattttctgtgtctttctttgatgtcaaggg 234  Q
    ||| ||||| ||||||||||||||||||||||||    
T  50262228 tgtgattttttgtgtctttctttgatgtcaaggg 50262195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 66 - 162
Target Start/End: Complemental strand, 3475700 - 3475604
Alignment:
Q  66 tagactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgt 162  Q
    |||||||||||||||  ||||||| | ||| |||||| ||||||||||| || |  ||||||||||| |||| ||||| ||||| ||||||||||||    
T  3475700 tagactattacttttttcaccctgttgccttctcgcgtgccctacaaaaattccataaatacccctgatccggattacgtaatccggaccagattgt 3475604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 67 - 231
Target Start/End: Complemental strand, 11952850 - 11952692
Alignment:
Q  67 agactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagt 166  Q
    ||||||||||||||||||||||||   || || || |||||| |||||||| | |||||| || ||||||| ||   |||||| |||| ||||||| |||    
T  11952850 agactattacttttcccaccctgc---cttctagctcgccctgcaaaatttccaaaaatatccatggtccggat---ataatccggacaagattgttagt 11952757  T
Q  167 tattttcggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaa 231  Q
     |||| ||||||   |||| ||||||||||||| |||  |||| ||| ||||||||| |||||||    
T  11952756 gatttgcggaaaattaaatccggaccagatgttatgtgtttttttgtatctttcttttatgtcaa 11952692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 68 - 162
Target Start/End: Complemental strand, 22335334 - 22335240
Alignment:
Q  68 gactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttacta-aaatacccctggtccgaattacataatctggaccagattgt 162  Q
    ||||| |||||||||||||||  | ||| |||||||||||| ||||| || ||| |||||||||||||||| ||||| ||||| ||||||||||||    
T  22335334 gactactacttttcccaccctattgccttctcgcgcgccctgcaaaaatt-ctataaatacccctggtccggattacgtaatccggaccagattgt 22335240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 97 - 233
Target Start/End: Original strand, 12528179 - 12528314
Alignment:
Q  97 ctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagttattttcggaaacagaaattcggaccagat 196  Q
    |||||||||||| |||||||| | ||||||||||| ||||| ||||||||| | ||| |||||||| ||| | || | ||||  |||||  |||| ||||    
T  12528179 ctcgcgcgccctgcaaaattttcaaaaatacccctcgtccggattacataacccggatcagattgttagtga-ttccagaaaacgaaatctggactagat 12528277  T
Q  197 gttgtgtaattttctgtgtctttctttgatgtcaagg 233  Q
     || |||  ||||||| || |||||||||||||||||    
T  12528278 attatgtgcttttctgagtttttctttgatgtcaagg 12528314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 162
Target Start/End: Original strand, 39597915 - 39598009
Alignment:
Q  67 agactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgt 162  Q
    ||||||| ||||||||||||||| | ||| ||| |||||||||||||| || |  |||||||||||  ||| ||||| ||||| ||||||||||||    
T  39597915 agactatcacttttcccaccctgttgccttctcacgcgccctacaaaa-ttccataaatacccctgagccggattacgtaatccggaccagattgt 39598009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 72 - 162
Target Start/End: Complemental strand, 29947112 - 29947023
Alignment:
Q  72 attacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgt 162  Q
    |||||||||||||||||| | ||| |||||||||||| ||||| || |  |||||||| |||| || ||||| ||||| ||||||||||||    
T  29947112 attacttttcccaccctgttgccttctcgcgcgccctgcaaaaattccataaatacccatggt-cggattacgtaatccggaccagattgt 29947023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 231
Target Start/End: Complemental strand, 23984476 - 23984307
Alignment:
Q  63 tgatagactattacttttc-ccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattg 161  Q
    ||||||||||||||||||| |||||||  |  ||  |||| ||||||  ||||| ||  |||||| ||||| |||  |||| ||||||  ||||||||||    
T  23984476 tgatagactattacttttctccaccctattgtcttttcgcacgccctgtaaaatgtataaaaataaccctgatccagattatataatccagaccagattg 23984377  T
Q  162 taagttattttcggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaa 231  Q
    | ||| || |  |||||  || || ||||||||||||| |||  |||| |||||||||||||||||||||    
T  23984376 ttagtgatgtcaggaaaacgatatccggaccagatgttatgtgtttttttgtgtctttctttgatgtcaa 23984307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 132
Target Start/End: Original strand, 41086119 - 41086182
Alignment:
Q  69 actattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctg 132  Q
    |||||||||||||| | |||||| ||| ||||||||| || |||||||| | ||||||||||||    
T  41086119 actattacttttcctatcctgctgccttctcgcgcgctctgcaaaatttccaaaaatacccctg 41086182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 132
Target Start/End: Original strand, 41090887 - 41090950
Alignment:
Q  69 actattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctg 132  Q
    |||||||||||||| | |||||| ||| ||||||||| || |||||||| | ||||||||||||    
T  41090887 actattacttttcctatcctgctgccttctcgcgcgctctgcaaaatttccaaaaatacccctg 41090950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 234
Target Start/End: Original strand, 27216506 - 27216668
Alignment:
Q  73 ttacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagttatttt 172  Q
    |||||||||||||| | || | | |||||||||||| ||||| || | |||||| | ||| ||||   || |||||| |||| | ||||| | | ||||     
T  27216506 ttacttttcccaccttactgctttctcgcgcgccctgcaaaaatttcaaaaatatctctgatccgggctatataatcaggacaatattgttattgatttc 27216605  T
Q  173 cggaaacagaaattcggaccagat-gttgtgtaattttctgtgtctttctttgatgtcaaggg 234  Q
    ||||||  ||||||||||||| || ||| |||  ||||  |||||||||||||||||||||||    
T  27216606 cggaaaacgaaattcggaccatattgttatgtgctttttagtgtctttctttgatgtcaaggg 27216668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 162
Target Start/End: Complemental strand, 7565011 - 7564922
Alignment:
Q  73 ttacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgt 162  Q
    ||||||||||||||||||| ||| |||||||||  | ||||| || | |||||| || ||||||| ||||| |  || ||||||||||||    
T  7565011 ttacttttcccaccctgctgccttctcgcgcgctttgcaaaaattccaaaaatatccttggtccggattacgttttccggaccagattgt 7564922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 162
Target Start/End: Complemental strand, 10313524 - 10313428
Alignment:
Q  66 tagactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgt 162  Q
    |||||||||| |||||||||| || | ||| ||||| |||||| ||||| |||   ||||| ||||||||   ||||| ||||| ||||||||||||    
T  10313524 tagactattatttttcccaccttgttgccttctcgctcgccctgcaaaaattatgtaaatatccctggtctagattacgtaatccggaccagattgt 10313428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 162
Target Start/End: Original strand, 18271969 - 18272065
Alignment:
Q  66 tagactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgt 162  Q
    ||||||||| |||||||||||||| | ||| |||||||||||  ||||| || |  |||||||| |||||   ||||  ||||| ||||||||||||    
T  18271969 tagactattgcttttcccaccctgttgccttctcgcgcgcccagcaaaaattccataaatacccttggtctagattatgtaatccggaccagattgt 18272065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 162
Target Start/End: Original strand, 18276623 - 18276719
Alignment:
Q  66 tagactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgt 162  Q
    ||||||||| |||||||||||||| | ||| |||||||||||  ||||| || |  |||||||| |||||   ||||  ||||| ||||||||||||    
T  18276623 tagactattgcttttcccaccctgttgccttctcgcgcgcccagcaaaaattccataaatacccttggtctagattatgtaatccggaccagattgt 18276719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 199
Target Start/End: Original strand, 41086183 - 41086235
Alignment:
Q  147 atctggaccagattgtaagttattttcggaaacagaaattcggaccagatgtt 199  Q
    |||||||||||||||| ||| || | ||||||  |||||||||||||||||||    
T  41086183 atctggaccagattgttagtgatatccggaaaacgaaattcggaccagatgtt 41086235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 199
Target Start/End: Original strand, 41090951 - 41091003
Alignment:
Q  147 atctggaccagattgtaagttattttcggaaacagaaattcggaccagatgtt 199  Q
    |||||||||||||||| ||| || | ||||||  |||||||||||||||||||    
T  41090951 atctggaccagattgttagtgatatccggaaaacgaaattcggaccagatgtt 41091003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 134; Significance: 7e-70; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 66 - 234
Target Start/End: Original strand, 35158414 - 35158583
Alignment:
Q  66 tagactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaag 165  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||    
T  35158414 tagactattacttttcccaccctgctgcctcctcgcgcgccctgcaaaatttactaaaatacccctggtccggattacataatccggaccagattgttag 35158513  T
Q  166 ttattttcggaaacag-aaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaaggg 234  Q
    |||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  35158514 ttatttccggaaacagaaaattcggaccagatgttatgtaattttctgtgtctttctttgatgtcaaggg 35158583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 66 - 234
Target Start/End: Complemental strand, 45029462 - 45029294
Alignment:
Q  66 tagactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaag 165  Q
    ||||||||||||||| |||||||||| ||| ||| ||| |||| |||||||||||||||||||||| ||||| ||||||||||  ||| |||||||| ||    
T  45029462 tagactattactttttccaccctgctgccttctcccgcaccctgcaaaatttactaaaatacccctagtccggattacataattcggatcagattgttag 45029363  T
Q  166 ttattttcggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaaggg 234  Q
    | |||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  45029362 tgatttccgaaaacagaaattcggaccagatgttatgtaattttctgtgtctttctttgatgtcaaggg 45029294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 67 - 234
Target Start/End: Original strand, 45228787 - 45228954
Alignment:
Q  67 agactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagt 166  Q
    |||||||||||||| ||||||||||  || |||||||||||| |||||||||||||||||||| || ||   ||||||||||| |||||||||||| |||    
T  45228787 agactattactttttccaccctgctgtcttctcgcgcgccctgcaaaatttactaaaatacccttgatcatgattacataatccggaccagattgttagt 45228886  T
Q  167 tattttcggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaaggg 234  Q
     ||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  45228887 gattttcggaaacaaaaatccggaccagatgttatgtaattttctgtgtctttctttgatgtcaaggg 45228954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 69 - 234
Target Start/End: Complemental strand, 28781209 - 28781044
Alignment:
Q  69 actattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagtta 168  Q
    ||||||||||||| |||| |||| |||||||| || |||| |||||||||||||||||||||||||||| |||||  |||| |||||||||||| ||| |    
T  28781209 actattacttttctcaccatgctgcctcctcgtgcaccctgcaaaatttactaaaatacccctggtccggattacgcaatccggaccagattgttagtga 28781110  T
Q  169 ttttcggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaaggg 234  Q
    |||  |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  28781109 tttctggaaacagaaatccggaccagatgttatgtaattttctgtgtctttctttgatgtcaaggg 28781044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 68 - 231
Target Start/End: Original strand, 40727723 - 40727886
Alignment:
Q  68 gactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagtt 167  Q
    ||||| |||||||| ||||||||| |||||||||   |||| |||||||||||||||||||||||||||| |||| | ||||||||||||||||| |||     
T  40727723 gactactacttttctcaccctgctgcctcctcgcataccctgcaaaatttactaaaatacccctggtccggattatacaatctggaccagattgttagtg 40727822  T
Q  168 attttcggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaa 231  Q
    |||||||||||||||||| | ||||||||||| ||| |||||||||||||||||||||||||||    
T  40727823 attttcggaaacagaaatccagaccagatgttatgttattttctgtgtctttctttgatgtcaa 40727886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 67 - 234
Target Start/End: Complemental strand, 52417373 - 52417207
Alignment:
Q  67 agactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagt 166  Q
    |||||||||||||||| |||||||| ||| |||||| ||||| |||||||||||||||||||||||||||| ||||| ||||| |||||||||||| ||     
T  52417373 agactattacttttcctaccctgctgccttctcgcgtgccctgcaaaatttactaaaatacccctggtccggattacgtaatccggaccagattgttag- 52417275  T
Q  167 tattttcggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaaggg 234  Q
    | ||| ||||||||||||| ||||||| ||||| ||||||||| | ||||||||||||||||||||||    
T  52417274 tgtttccggaaacagaaatccggaccatatgttatgtaattttttatgtctttctttgatgtcaaggg 52417207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 68 - 234
Target Start/End: Complemental strand, 9036538 - 9036373
Alignment:
Q  68 gactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagtt 167  Q
    ||||||||||||| ||||||  || |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||| ||||||||  ||     
T  9036538 gactattactttttccacccgactgcctcctcgcgcgccctgcaaaatttactaaaatacccctggtccggattacataatccggatcagattgttcgtg 9036439  T
Q  168 attttcggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaaggg 234  Q
    |||| ||| |||||||||  |||||||||||| |||||||||||||||||||||||||||| |||||    
T  9036438 atttccgg-aacagaaatctggaccagatgttatgtaattttctgtgtctttctttgatgttaaggg 9036373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 71 - 234
Target Start/End: Original strand, 51538346 - 51538509
Alignment:
Q  71 tattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagttatt 170  Q
    ||||| ||||||||||||||| ||| |||||  ||||| |||||||||| | |||| |||||||||| ||||||||||  |||| ||||||| ||| |||    
T  51538346 tattatttttcccaccctgctgccttctcgcatgccctgcaaaatttacgacaataaccctggtccggattacataattcggactagattgttagtgatt 51538445  T
Q  171 ttcggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaaggg 234  Q
    | ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  51538446 tccggaaacagaaatccggaccagatgttatgtaattttctgtgtctttctttgatgtcaaggg 51538509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 66 - 234
Target Start/End: Original strand, 1602485 - 1602650
Alignment:
Q  66 tagactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaag 165  Q
    |||| |||||||||| ||| |||||| ||||||||| |||||||||||||||||||||||| |||||||||| ||||   |||| |||||||||||| ||    
T  1602485 tagattattactttttccaacctgctgcctcctcgcacgccctacaaaatttactaaaatatccctggtccggatta---aatccggaccagattgttag 1602581  T
Q  166 ttattttcggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaaggg 234  Q
    | ||||  ||||||||||||||||| |||||||| ||||| ||||||||| ||||||||||||||||||    
T  1602582 tgatttctggaaacagaaattcggatcagatgttatgtaactttctgtgtatttctttgatgtcaaggg 1602650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 73 - 234
Target Start/End: Complemental strand, 38551697 - 38551536
Alignment:
Q  73 ttacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagttatttt 172  Q
    ||||||||||||||||||| ||| |||||||||||| |||||||| | ||||||||||||||||| |||| |||||| |||||||||||| ||| |||||    
T  38551697 ttacttttcccaccctgctgccttctcgcgcgccctgcaaaatttccaaaaatacccctggtccggattatataatccggaccagattgttagtgatttt 38551598  T
Q  173 cggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaaggg 234  Q
    ||||||  ||||| ||||||||||||| |||  |||| |||||||||| |||||||||||||    
T  38551597 cggaaaacgaaatacggaccagatgttatgtgcttttttgtgtctttccttgatgtcaaggg 38551536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 68 - 234
Target Start/End: Original strand, 55136364 - 55136530
Alignment:
Q  68 gactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagtt 167  Q
    ||||||||||||| |||||||||| ||||||  ||| |||| ||||||||||||||||||||||| | || ||||||||||| ||| |||||||| |||     
T  55136364 gactattactttttccaccctgctgcctcctttcgcaccctgcaaaatttactaaaatacccctgattcggattacataatccggatcagattgttagtg 55136463  T
Q  168 attttcggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaaggg 234  Q
    |||||||||||||||||| ||||| | ||||| ||||||||  |||||||| |||||||||||||||    
T  55136464 attttcggaaacagaaatccggacaaaatgttatgtaatttgatgtgtcttcctttgatgtcaaggg 55136530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 93 - 234
Target Start/End: Original strand, 30003334 - 30003475
Alignment:
Q  93 cctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagttattttcggaaacagaaattcggacc 192  Q
    |||||||||||||||  || |||||| ||||||| | |||||||| |||| |||||| |||||||||||| ||||||||  |||||||||||| ||||||    
T  30003334 cctcctcgcgcgcccggcataatttattaaaatatctctggtccggattatataatccggaccagattgttagttatttctggaaacagaaatccggacc 30003433  T
Q  193 agatgttgtgtaattttctgtgtctttctttgatgtcaaggg 234  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  30003434 agatgttatgtaattttctgtgtctttctttgatgtcaaggg 30003475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 105 - 234
Target Start/End: Complemental strand, 43842280 - 43842151
Alignment:
Q  105 ccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagttattttcggaaacagaaattcggaccagatgttgtgta 204  Q
    |||| |||||||||||||||||||| |||||   ||||||||||| ||| |||||||| ||| |||||||||||||||||| ||| ||||||||| ||||    
T  43842280 ccctgcaaaatttactaaaatacccttggtctagattacataatccggatcagattgttagtgattttcggaaacagaaatccggcccagatgttatgta 43842181  T
Q  205 attttctgtgtctttctttgatgtcaaggg 234  Q
    ||||||||||||||||||||||||||||||    
T  43842180 attttctgtgtctttctttgatgtcaaggg 43842151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 82 - 233
Target Start/End: Original strand, 31092818 - 31092969
Alignment:
Q  82 ccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagttattttcggaaacag 181  Q
    ||||| |||| ||| ||||||||| ||| |||||||||||||||||||||| |||| |||||||| || |||||| ||||| ||||||||  ||||||||    
T  31092818 ccaccatgctgccttctcgcgcgctctataaaatttactaaaatacccctgctccggattacatattccggaccaaattgttagttatttctggaaacag 31092917  T
Q  182 aaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaagg 233  Q
    ||||  |||||||||||| ||||||| || ||||||||||||||||||||||    
T  31092918 aaatctggaccagatgttatgtaattctccgtgtctttctttgatgtcaagg 31092969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 72 - 234
Target Start/End: Original strand, 16451638 - 16451800
Alignment:
Q  72 attacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagttattt 171  Q
    |||||||||||||||||||| ||| ||||||||| || |||||||| | ||||||||| ||||| | |||| |||||| |||||||||||| ||| ||||    
T  16451638 attacttttcccaccctgctgccttctcgcgcgctctgcaaaattttcaaaaatacccttggtctggattatataatccggaccagattgttagtgattt 16451737  T
Q  172 tcggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaaggg 234  Q
    |||||||   |||| | ||||||||||| |||  |||| ||||||||||||||||||||||||    
T  16451738 tcggaaaacaaaatccagaccagatgttatgtgcttttttgtgtctttctttgatgtcaaggg 16451800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 65 - 199
Target Start/End: Original strand, 45458036 - 45458170
Alignment:
Q  65 atagactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaa 164  Q
    ||||||||||||||||||||||||||| |||||||||| ||| | |||||||||||||||||||| ||||||| ||||||||||| | |||||||| | |    
T  45458036 atagactattacttttcccaccctgctgcctcctcgcgtgccttgcaaaatttactaaaatacccttggtccggattacataatccgaaccagattatta 45458135  T
Q  165 gttattttcggaaacagaaattcggaccagatgtt 199  Q
    |||||||||| ||||| ||||  ||| ||||||||    
T  45458136 gttattttcgaaaacataaatctggatcagatgtt 45458170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 69 - 234
Target Start/End: Original strand, 16023572 - 16023737
Alignment:
Q  69 actattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagtta 168  Q
    |||||||||||| ||| ||| || | | ||||||| |||| ||||||||||||||||||||||||| || ||||||||||  |||| | ||||| ||| |    
T  16023572 actattactttttccatcctactgcgttctcgcgcaccctgcaaaatttactaaaatacccctggttcggattacataattcggacaatattgttagtga 16023671  T
Q  169 ttttcggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaaggg 234  Q
    ||| ||| |||| | || |||||||||| || ||||||||||||||||||||||||||||||||||    
T  16023672 tttccggtaacaaatatccggaccagatcttatgtaattttctgtgtctttctttgatgtcaaggg 16023737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 65 - 234
Target Start/End: Complemental strand, 56464084 - 56463915
Alignment:
Q  65 atagactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaa 164  Q
    ||||||||||| |||||||||||| |  ||| |||| |||||||   |  || || ||||||||| | ||||| |||  |||||| | | |||||||| |    
T  56464084 atagactattatttttcccaccctacagccttctcgtgcgccctgtgattttgaccaaaataccctttgtccggattgtataatccgaatcagattgtta 56463985  T
Q  165 gttattttcggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaaggg 234  Q
    || |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  56463984 gtgattttcggaaacagaaatccggaccagatgttatgtaattttctgtgtctttctttgatgtcaaggg 56463915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 68 - 234
Target Start/End: Complemental strand, 38218707 - 38218541
Alignment:
Q  68 gactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagtt 167  Q
    ||||||||||||||||||||| |  ||| |||||||||||||  |  || || ||||||||| | || || |||  |||||||| | |||||||| |||     
T  38218707 gactattacttttcccaccctacagccttctcgcgcgccctatgattttgaccaaaataccctttgttcggattgtataatctgaatcagattgttagtg 38218608  T
Q  168 attttcggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaaggg 234  Q
    |||| | ||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  38218607 atttccagaaacagaaatccggaccagatgttatgtaattttttgtgtctttctttgatgtcaaggg 38218541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 66 - 231
Target Start/End: Complemental strand, 2016227 - 2016063
Alignment:
Q  66 tagactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaag 165  Q
    |||||||| ||||||||||||||||| ||| || ||||||| |||| ||||||| ||||||||| ||||  | |||| |||||| |||| ||||||| ||    
T  2016227 tagactatcacttttcccaccctgctgccttcttgcgcgcc-tacataatttacaaaaatacccatggtatggattatataatccggactagattgttag 2016129  T
Q  166 ttattttcggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaa 231  Q
    | || | ||||||  ||||| ||||||||||||| ||| ||||| |||||||||||||||||||||    
T  2016128 tgatatccggaaaacgaaatccggaccagatgttatgtgattttttgtgtctttctttgatgtcaa 2016063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 71 - 234
Target Start/End: Complemental strand, 15543272 - 15543108
Alignment:
Q  71 tattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagttatt 170  Q
    |||||||||||||||| |||| ||| ||||||||||||||||||||| | ||||||||| ||||||  |||| ||||||  ||| ||||||| ||| |||    
T  15543272 tattacttttcccaccttgctgccttctcgcgcgccctacaaaatttccaaaaatacccatggtccagattatataatccagactagattgttagtgatt 15543173  T
Q  171 ttcggaaacagaaattcgg-accagatgttgtgtaattttctgtgtctttctttgatgtcaaggg 234  Q
    ||||||||   |||||||| || ||||||| |||  |||| | ||||||||||||||||||||||    
T  15543172 ttcggaaaattaaattcggaacaagatgttatgtgcttttttttgtctttctttgatgtcaaggg 15543108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 66 - 234
Target Start/End: Complemental strand, 35320331 - 35320163
Alignment:
Q  66 tagactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaag 165  Q
    ||||||||||||||| ||||| || | ||| |||||||||||| |||||||| | ||||||||||||||||| |||| |||||| |||||||||||| ||    
T  35320331 tagactattacttttaccaccttggtgccttctcgcgcgccctgcaaaatttccaaaaatacccctggtccggattatataatccggaccagattgttag 35320232  T
Q  166 ttattttcggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaaggg 234  Q
    | ||||| |||      ||| ||||||||||||| |||  |||| ||||||||||||| ||||||||||    
T  35320231 tgatttttggattatataatccggaccagatgttatgtgcttttttgtgtctttcttttatgtcaaggg 35320163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 68 - 231
Target Start/End: Original strand, 45924302 - 45924465
Alignment:
Q  68 gactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagtt 167  Q
    ||||||||||||| |||| ||||| ||| |||||||||| | ||||||||   ||||||||||||||||| |||| |||||| |||||| ||||| |||     
T  45924302 gactattactttttccactctgctgccttctcgcgcgccatgcaaaatttttaaaaatacccctggtccggattatataatccggaccaaattgttagtg 45924401  T
Q  168 attttcggaaaca-gaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaa 231  Q
    |||||| | ||||  |||||||||||||||||| |||  |||| |||||||||||||||||||||    
T  45924402 attttccggaacattaaattcggaccagatgttatgtgctttt-tgtgtctttctttgatgtcaa 45924465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 68 - 230
Target Start/End: Complemental strand, 4190308 - 4190146
Alignment:
Q  68 gactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagtt 167  Q
    |||||||||||||||||||||| |  || || ||||||||| |||||||| | |||||||||||||| || |||| ||||||  ||||||||||| ||      
T  4190308 gactattacttttcccaccctgttgtcttcttgcgcgcccttcaaaatttccaaaaatacccctggttcggattatataatcctgaccagattgttagcg 4190209  T
Q  168 attttcggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtca 230  Q
    |||| ||||||   |||||||||||| ||||| |||  |||| ||||||||||||||||||||    
T  4190208 atttccggaaaattaaattcggaccaaatgttatgtgcttttttgtgtctttctttgatgtca 4190146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 67 - 232
Target Start/End: Original strand, 49374021 - 49374186
Alignment:
Q  67 agactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagt 166  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||||| | ||||||||||||||||  |||| | |||| |||| ||||||| | |    
T  49374021 agactattacttttcccaccctgctaccttctcgcgcgccctgcaaaattttcaaaaatacccctggtccagattatacaatccggacgagattgttaat 49374120  T
Q  167 tattttcggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaag 232  Q
     ||   || |||   |||| ||||||| ||||| ||   |||| ||||||||||||||||||||||    
T  49374121 gatccccgaaaaacaaaatccggaccatatgttatgcgcttttttgtgtctttctttgatgtcaag 49374186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 68 - 234
Target Start/End: Complemental strand, 28311325 - 28311159
Alignment:
Q  68 gactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagtt 167  Q
    |||||||||||||||||||||||| ||| |||||||| ||| ||||||||   ||| |||||||||| || || | |||||| |||||||||||| |||     
T  28311325 gactattacttttcccaccctgctgccttctcgcgcgtcctgcaaaatttcaaaaattacccctggttcggataatataatccggaccagattgttagtg 28311226  T
Q  168 attttcggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaaggg 234  Q
    ||||| |||||    ||| ||||||||||||| ||   |||| ||||||||||||| ||| ||||||    
T  28311225 atttttggaaaatttaatccggaccagatgttatgcgtttttttgtgtctttctttaatgccaaggg 28311159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 78 - 219
Target Start/End: Complemental strand, 168973 - 168832
Alignment:
Q  78 tttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagttattttcggaa 177  Q
    ||||||||||| || ||| |||||| |||||||||||||| | || ||||||||||| || |||| |||||  |||||||||||| ||| ||||| ||||    
T  168973 tttcccaccctactgccttctcgcgtgccctacaaaattttcaaatatacccctggttcggattatataattcggaccagattgttagtgatttttggaa 168874  T
Q  178 acagaaattcggaccagatgttgtgtaattttctgtgtcttt 219  Q
    | |||||| ||||   |||||| |||  ||||||||||||||    
T  168873 atagaaatccggaagtgatgttatgtgcttttctgtgtcttt 168832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 145 - 229
Target Start/End: Original strand, 33280862 - 33280946
Alignment:
Q  145 taatctggaccagattgtaagttattttcggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtc 229  Q
    ||||| |||||||||||| ||| |||| || ||||||||||  |||||| ||||| |||  ||||||| ||||||||||||||||    
T  33280862 taatccggaccagattgttagtgatttccgaaaacagaaatctggaccaaatgttatgtgtttttctgcgtctttctttgatgtc 33280946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 145 - 234
Target Start/End: Original strand, 6963235 - 6963324
Alignment:
Q  145 taatctggaccagattgtaagttattttc-ggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaaggg 234  Q
    ||||| |||||||||||| ||| |||||| |||||  ||| | ||||||||||||| |||  |||||||||||||||||| ||||||||||    
T  6963235 taatccggaccagattgttagtgattttcaggaaattgaa-tccggaccagatgttatgtgcttttctgtgtctttctttaatgtcaaggg 6963324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 126
Target Start/End: Original strand, 33280802 - 33280859
Alignment:
Q  69 actattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaata 126  Q
    |||||||||||||||||||| || ||| ||||||||  || |||||||||||||||||    
T  33280802 actattacttttcccaccctactgccttctcgcgcgttctgcaaaatttactaaaata 33280859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 201 - 234
Target Start/End: Original strand, 45461326 - 45461359
Alignment:
Q  201 tgtaattttctgtgtctttctttgatgtcaaggg 234  Q
    ||||||||||||||||||||||||||||||||||    
T  45461326 tgtaattttctgtgtctttctttgatgtcaaggg 45461359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 162
Target Start/End: Complemental strand, 55614282 - 55614187
Alignment:
Q  66 tagactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgt 162  Q
    ||||||||||||||||| |||||| |  || |||||||||| |  |||| || |  |||||||||||||||  ||||| ||||||||||||||||||    
T  55614282 tagactattacttttcc-accctgttgtcttctcgcgcgccttgtaaaaattccataaatacccctggtccagattacgtaatctggaccagattgt 55614187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 162
Target Start/End: Complemental strand, 47986113 - 47986018
Alignment:
Q  67 agactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgt 162  Q
    ||||| |||||||||||| ||||   | | ||||||||||||  |||| || |  |||||||||||||||| ||||| ||||| ||||||||||||    
T  47986113 agactgttacttttcccatcctgtggctttctcgcgcgccctggaaaaattccataaatacccctggtccggattacgtaatccggaccagattgt 47986018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 120; Significance: 2e-61; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 67 - 234
Target Start/End: Complemental strand, 40105689 - 40105522
Alignment:
Q  67 agactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagt 166  Q
    |||||||||||||| |||||||||| |||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||  |||||||||||| |||    
T  40105689 agactattactttttccaccctgctgcctcctcgcgcgccctgcaaaatttattaaaatacccctggtccggattacataattcggaccagattgttagt 40105590  T
Q  167 tattttcggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaaggg 234  Q
    ||||| || |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  40105589 tatttccgcaaacagaaatccggaccagatgttatgtaattttctgtgtctttctttgatgtcaaggg 40105522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 69 - 234
Target Start/End: Complemental strand, 8240426 - 8240261
Alignment:
Q  69 actattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagtta 168  Q
    |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||   |||||||| ||||||||||| ||||| |||||| |||||    
T  8240426 actattactttttccaccctgctgcctcctcgcgcgccctacaaaatttactaaaatatttctggtccggattacataatccggaccggattgttagtta 8240327  T
Q  169 ttttcggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaaggg 234  Q
    ||| | ||||||||||| ||||||||||||| ||||||||| ||||||||||||| ||||||||||    
T  8240326 tttcctgaaacagaaatccggaccagatgttatgtaattttttgtgtctttctttaatgtcaaggg 8240261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 69 - 232
Target Start/End: Complemental strand, 39319034 - 39318871
Alignment:
Q  69 actattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagtta 168  Q
    ||||||||||||||||| ||| | ||| |||||| || || ||||||||| |||||||||||||||||| ||||||||||||| |||||||||| |||||    
T  39319034 actattacttttcccactctgatgccttctcgcgtgctctgcaaaatttattaaaatacccctggtccggattacataatctgaaccagattgttagtta 39318935  T
Q  169 ttttcggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaag 232  Q
    |||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||| |||||    
T  39318934 ttttcgaaaacagaaatccggaccagatgttatgtaattttctgtgtctttctttgatatcaag 39318871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 68 - 234
Target Start/End: Original strand, 32946776 - 32946943
Alignment:
Q  68 gactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagtt 167  Q
    ||||||||||||| |||||||||| ||||||| ||||| || |||||||||||||||||||||||  ||| ||||||||||| ||| |||||||| |||     
T  32946776 gactattactttttccaccctgctgcctcctc-cgcgctctgcaaaatttactaaaatacccctgacccggattacataatccggatcagattgttagtg 32946874  T
Q  168 attttcggaaacag--aaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaaggg 234  Q
    |||| |||||||||  |||| ||||||||||||| ||||||||||||||||||||||| || |||||||    
T  32946875 atttccggaaacagaaaaatccggaccagatgttatgtaattttctgtgtctttctttaatctcaaggg 32946943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 68 - 234
Target Start/End: Original strand, 6346999 - 6347165
Alignment:
Q  68 gactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagtt 167  Q
    ||||||||||||| | |||||||| ||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||| || ||||| |||     
T  6346999 gactattactttttctaccctgctgccttctcgcgcgccctgcaaaatttactaaaatacccctggtccggattacataatccggagcaaattgttagtg 6347098  T
Q  168 attttcggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaaggg 234  Q
    || | || |||  ||||||||||||||||||| ||   |||| ||||||||||||||||||||||||    
T  6347099 atatccgaaaaacgaaattcggaccagatgttatgcgtttttttgtgtctttctttgatgtcaaggg 6347165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 67 - 234
Target Start/End: Original strand, 29544103 - 29544268
Alignment:
Q  67 agactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagt 166  Q
    ||||||||||||||||||||||||| ||| |||| ||||||| |||||||| | |||||||||||||||||||||| |||||| |||||||||||| ||     
T  29544103 agactattacttttcccaccctgctgccttctcgtgcgccctgcaaaatttccaaaaatacccctggtccgaattatataatccggaccagattgttag- 29544201  T
Q  167 tattttcggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaaggg 234  Q
    | ||| |||||||  |||| ||||||||||||| |||  |||| ||||| ||||||||||||||||||    
T  29544202 tgtttccggaaac-taaatccggaccagatgttatgtgcttttttgtgtgtttctttgatgtcaaggg 29544268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 67 - 231
Target Start/End: Original strand, 20091264 - 20091428
Alignment:
Q  67 agactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagt 166  Q
    ||||||||||||||| ||||||||| ||| |||||||||||| |||||||| | ||||||||||||||| | ||||| ||||| |||||||||||| |||    
T  20091264 agactattacttttcacaccctgctgccttctcgcgcgccctgcaaaatttccaaaaatacccctggtctggattacgtaatccggaccagattgttagt 20091363  T
Q  167 tattttcggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaa 231  Q
     |||| ||||||   |||| ||||||||||||| ||   |||| |||||||||||||||||||||    
T  20091364 gatttccggaaaattaaatccggaccagatgttatgggtttttttgtgtctttctttgatgtcaa 20091428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 65 - 231
Target Start/End: Complemental strand, 43098981 - 43098816
Alignment:
Q  65 atagactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaa 164  Q
    ||||||||||||||||||||||||||| ||| ||||||| |||| |||||||| | |||||||||| ||| || |||| ||||||  ||||||||||| |    
T  43098981 atagactattacttttcccaccctgctgccttctcgcgcacccttcaaaatttccaaaaatacccccggttcggattatataatccagaccagattgtta 43098882  T
Q  165 gttattttcggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaa 231  Q
    || |||| || |||   ||||  |||||||||||| |||  |||| |||||||||||||||||||||    
T  43098881 gtgatttccgaaaatt-aaatctggaccagatgttatgtgcttttttgtgtctttctttgatgtcaa 43098816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 73 - 232
Target Start/End: Original strand, 32337516 - 32337675
Alignment:
Q  73 ttacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagttatttt 172  Q
    ||||||||||||||||||| | | |||| | ||||| |||||||| | ||||||||| |||| || |||| |||||||||| |||||||| ||  || |     
T  32337516 ttacttttcccaccctgctgctttctcgtgtgccctgcaaaatttccaaaaatacccttggttcggattatataatctggagcagattgttagcgatatc 32337615  T
Q  173 cggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaag 232  Q
    |||| | |||||| ||||||||||||| |||  |||| ||||||||||||||||||||||    
T  32337616 cggacaaagaaatccggaccagatgttatgtgcttttttgtgtctttctttgatgtcaag 32337675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 67 - 234
Target Start/End: Complemental strand, 39260715 - 39260566
Alignment:
Q  67 agactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagt 166  Q
    |||||||||||||||||| ||||||||||||||||||||| | ||||||||| ||||||||                |||||| |||||||||||| |||    
T  39260715 agactattacttttcccatcctgctacctcctcgcgcgcc-tgcaaaatttattaaaatac----------------ataatccggaccagattgttagt 39260633  T
Q  167 tattttcggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaaggg 234  Q
      ||| ||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  39260632 g-tttccggaaacagaaatccggaccagatgttatgtaattttctgtgtttttctttgatgtcaaggg 39260566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 97 - 232
Target Start/End: Complemental strand, 13546594 - 13546459
Alignment:
Q  97 ctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagttattttcggaaacagaaattcggaccagat 196  Q
    |||||||||||| |||||||| | |||||||||||||| || |||| |||||   ||||||||||| ||| |||| ||||||   |||| ||||||||||    
T  13546594 ctcgcgcgccctgcaaaatttccaaaaatacccctggttcggattatataatacagaccagattgttagtgatttccggaaaattaaatccggaccagat 13546495  T
Q  197 gttgtgtaattttctgtgtctttctttgatgtcaag 232  Q
    ||| |||  |||| ||||||||||||||||||||||    
T  13546494 gttatgtggttttttgtgtctttctttgatgtcaag 13546459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 97 - 232
Target Start/End: Original strand, 13677879 - 13678014
Alignment:
Q  97 ctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagttattttcggaaacagaaattcggaccagat 196  Q
    |||||||||||| |||||||| | |||||||||||||| || |||| |||||   ||||||||||| ||| |||| ||||||   |||| ||||||||||    
T  13677879 ctcgcgcgccctgcaaaatttccaaaaatacccctggttcggattatataatacagaccagattgttagtgatttccggaaaattaaatccggaccagat 13677978  T
Q  197 gttgtgtaattttctgtgtctttctttgatgtcaag 232  Q
    ||| |||  |||| ||||||||||||||||||||||    
T  13677979 gttatgtggttttttgtgtctttctttgatgtcaag 13678014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 65 - 234
Target Start/End: Complemental strand, 35684460 - 35684289
Alignment:
Q  65 atagactattacttttcccaccct---gctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattg 161  Q
    |||||||||||||||||||| | |   | | |||||||  ||| ||| ||||||||||||||||| |||||||| | ||||||||||| ||| |||||||    
T  35684460 atagactattacttttcccatcatcaggttgcctcctcctgcgtcctgcaaaatttactaaaatatccctggtctggattacataatccggatcagattg 35684361  T
Q  162 taagttattttcggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaaggg 234  Q
    | || | |||||||||||| ||||  ||| || ||||| ||||||||| ||||| |||||||||||| |||||    
T  35684360 ttag-tgttttcggaaacataaatctggaacaaatgttatgtaattttttgtgtttttctttgatgttaaggg 35684289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 72 - 234
Target Start/End: Complemental strand, 42132301 - 42132141
Alignment:
Q  72 attacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagttattt 171  Q
    ||||||||| |||||||||| ||| |||| ||| ||| ||||| || |  ||||||||||| |||||||||| |||| ||||  ||||||| || | |||    
T  42132301 attactttttccaccctgctgccttctcgtgcgtcctgcaaaaatttcataaatacccctgatccgaattacgtaatttggattagattgttag-tgttt 42132203  T
Q  172 tcggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaaggg 234  Q
     ||||||||||||| |||| |||||||| ||||||||| |||||||  |||||||||||||||    
T  42132202 ccggaaacagaaatccgga-cagatgttatgtaattttttgtgtctaactttgatgtcaaggg 42132141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 65 - 162
Target Start/End: Original strand, 37098093 - 37098190
Alignment:
Q  65 atagactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgt 162  Q
    ||||| ||||||||||||||||||| | ||| |||||||||||| |||||||| | ||||||||| ||||| | |||| |||||| ||||||||||||    
T  37098093 atagaatattacttttcccaccctgttgccttctcgcgcgccctgcaaaatttccaaaaatacccatggtctggattatataatccggaccagattgt 37098190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 69 - 162
Target Start/End: Complemental strand, 12158 - 12065
Alignment:
Q  69 actattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgt 162  Q
    ||||||||||||||||||||| | ||| |||||||||||| ||||| || |  |||||||||||||| | ||||| ||||| ||||||||||||    
T  12158 actattacttttcccaccctgttgccttctcgcgcgccctgcaaaaattccataaatacccctggtctggattacgtaatccggaccagattgt 12065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 101 - 234
Target Start/End: Complemental strand, 23144508 - 23144376
Alignment:
Q  101 cgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagttattttcggaaacagaaattcggaccagatgttg 200  Q
    |||| ||| |||||||| | || |||||| ||||||| |||| |||||| |||||||||||| |||  |||||| |||  ||||| |||| ||||||||     
T  23144508 cgcgtcctccaaaattttcaaatatacccttggtccggattatataatccggaccagattgttagtg-ttttcgaaaaacgaaatccggatcagatgtta 23144410  T
Q  201 tgtaattttctgtgtctttctttgatgtcaaggg 234  Q
    |||  |||| ||||||||||||||||||||||||    
T  23144409 tgtgcttttttgtgtctttctttgatgtcaaggg 23144376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 73 - 234
Target Start/End: Complemental strand, 586841 - 586679
Alignment:
Q  73 ttacttttccc-accctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagttattt 171  Q
    ||||||||||| ||||||||   | ||||| |||||| |||||||| | ||||||||  ||||| |||||| |||||| | | |||||||| ||| || |    
T  586841 ttacttttccccaccctgctgtattctcgcacgccctgcaaaatttccaaaaatacctgtggtctgaattatataatccgaagcagattgttagtgatat 586742  T
Q  172 tcggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaaggg 234  Q
       || | |||||| ||||||||||||| |||  |||| ||||||||||||||||||||||||    
T  586741 ctagacaaagaaatccggaccagatgttatgtgtttttttgtgtctttctttgatgtcaaggg 586679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 234
Target Start/End: Original strand, 627081 - 627244
Alignment:
Q  73 ttacttttccc-accctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagttattt 171  Q
    ||||||||||| |||||||| | | |||||| ||||| |||||||| | |||||||   ||||| |||||| |||||| | | |||||||| ||| || |    
T  627081 ttacttttccccaccctgctgcattctcgcgtgccctgcaaaatttccaaaaatacttgtggtctgaattatataatccgaagcagattgttagtgatat 627180  T
Q  172 tcggaaacagaaattcggaccagatgttgtgtaattttct-gtgtctttctttgatgtcaaggg 234  Q
       || | |||||| ||||||||||||| |||  |||| | |||||||||||||||||||||||    
T  627181 ctagacaaagaaatccggaccagatgttatgtgttttttttgtgtctttctttgatgtcaaggg 627244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 162
Target Start/End: Complemental strand, 23421345 - 23421288
Alignment:
Q  105 ccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgt 162  Q
    |||||||||| || |  ||||||||||||||| |||||| ||||||||||||||||||    
T  23421345 ccctacaaaaattccataaatacccctggtccaaattacgtaatctggaccagattgt 23421288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 119; Significance: 6e-61; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 68 - 234
Target Start/End: Original strand, 46254564 - 46254730
Alignment:
Q  68 gactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagtt 167  Q
    |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||| |||||||| |||     
T  46254564 gactattacttttcccaccctgctgcctcctcgcgcgccctgcaaaatttactaaaatacccctggtccggattacataatccggatcagattgttagtg 46254663  T
Q  168 attttcggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaaggg 234  Q
    |||| |||||||||||||  |||||||||||| |||||||||| |||||||||||||||||||||||    
T  46254664 atttccggaaacagaaatctggaccagatgttatgtaattttccgtgtctttctttgatgtcaaggg 46254730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 67 - 231
Target Start/End: Complemental strand, 36312520 - 36312358
Alignment:
Q  67 agactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagt 166  Q
    ||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||| ||||| || ||||| ||||| |||||||||||| ||     
T  36312520 agactattacttttcccaccctgctgcctcctcgcgcactctacaaaatttactaaaatacctctggttcggattacgtaatccggaccagattgttag- 36312422  T
Q  167 tattttcggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaa 231  Q
    | ||| || |||||||||| |||| |||||||| ||||||||||| |||||||||||||||||||    
T  36312421 tgtttccgaaaacagaaatccgga-cagatgttatgtaattttctatgtctttctttgatgtcaa 36312358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 68 - 231
Target Start/End: Complemental strand, 34848314 - 34848151
Alignment:
Q  68 gactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagtt 167  Q
    |||||||| ||||||||||||||| ||| |||||||  ||||||||||||| ||||||| |||||||||| ||||||| ||  ||| |||||||| |||     
T  34848314 gactattatttttcccaccctgctgccttctcgcgcatcctacaaaatttattaaaatatccctggtccggattacattattcggatcagattgttagtg 34848215  T
Q  168 attttcggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaa 231  Q
    |||| ||||||||||||| |||||||||  || ||||||||||| |||||||||||||||||||    
T  34848214 atttccggaaacagaaatccggaccagaatttatgtaattttctatgtctttctttgatgtcaa 34848151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 73 - 234
Target Start/End: Original strand, 35794180 - 35794341
Alignment:
Q  73 ttacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagttatttt 172  Q
    |||||||||||||||| || ||| ||||| || ||| ||||||||||||||||| ||||||| || ||||||||||| | |||||||||| ||| ||||     
T  35794180 ttacttttcccaccctactgccttctcgcacgacctgcaaaatttactaaaataaccctggttcggattacataatccgaaccagattgttagtgatttc 35794279  T
Q  173 cggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaaggg 234  Q
     ||||||| |||| ||||| ||||||| ||||||||||| ||||||||||||||||||||||    
T  35794280 tggaaacaaaaatccggactagatgttatgtaattttctctgtctttctttgatgtcaaggg 35794341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 69 - 234
Target Start/End: Original strand, 44862716 - 44862881
Alignment:
Q  69 actattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagtta 168  Q
    ||||||| ||||| || | |||| ||||||||||| |||| |||||||||||||||||| | ||||| | |||| |||||| | | || ||||| |||||    
T  44862716 actattatttttctcatcttgctgcctcctcgcgcaccctgcaaaatttactaaaatactcatggtctggattatataatccgtagcaaattgttagtta 44862815  T
Q  169 ttttcggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaaggg 234  Q
    ||| || |||||||||| |  |||||||||| |||||||||||||||||||||||||||| |||||    
T  44862816 tttccgaaaacagaaatccaaaccagatgttatgtaattttctgtgtctttctttgatgttaaggg 44862881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 97 - 231
Target Start/End: Original strand, 43269989 - 43270123
Alignment:
Q  97 ctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagttattttcggaaacagaaattcggaccagat 196  Q
    |||||||||||| ||||||||| |||| || ||||| |||| ||||||||||| ||| |||||||| ||| |||  | ||| ||||||| ||||||||||    
T  43269989 ctcgcgcgccctgcaaaatttattaaagtatccctgatccggattacataatccggatcagattgttagtaattaccagaatcagaaatccggaccagat 43270088  T
Q  197 gttgtgtaattttctgtgtctttctttgatgtcaa 231  Q
    ||| ||||||||| |||||||||||||||||||||    
T  43270089 gttatgtaattttttgtgtctttctttgatgtcaa 43270123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 68 - 234
Target Start/End: Original strand, 43457885 - 43458051
Alignment:
Q  68 gactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagtt 167  Q
    |||||||||||||| |||| |||| ||| ||| |||||||| |||||||| | ||||||| ||||||||| |||| ||| || | |||||||||| |||     
T  43457885 gactattacttttcacaccttgctgccttctcacgcgccctgcaaaattttcaaaaatactcctggtccggattatatattccgaaccagattgttagtg 43457984  T
Q  168 attttcggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaaggg 234  Q
    ||||||||||   ||||||||||||| || || |||  |||| ||||||||||||| ||||||||||    
T  43457985 attttcggaatacgaaattcggaccaaatattatgtgcttttttgtgtctttctttcatgtcaaggg 43458051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 144 - 234
Target Start/End: Original strand, 33950704 - 33950794
Alignment:
Q  144 ataatctggaccagattgtaagttattttcggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaaggg 234  Q
    |||||| ||| | |||||| ||| |||| |||||||||||||||||||||||| || ||||||||| ||||||||||||| ||||||||||    
T  33950704 ataatccggatcggattgttagtgatttccggaaacagaaattcggaccagatcttatgtaattttttgtgtctttcttttatgtcaaggg 33950794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 66 - 231
Target Start/End: Complemental strand, 14817087 - 14816923
Alignment:
Q  66 tagactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaag 165  Q
    |||| ||||||||||  |||||| || ||| |||||||| ||| |||||||| | |||||||||| | || | |||| |||||| |||||||||| | ||    
T  14817087 tagaatattacttttttcaccctactgccttctcgcgcgtcctgcaaaatttccaaaaatacccccgatctggattatataatccggaccagattattag 14816988  T
Q  166 ttattttcggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaa 231  Q
    | ||||| |||||   |||||||||| ||||||| |||  |||| | |||||||||||||||||||    
T  14816987 tgatttt-ggaaaattaaattcggacaagatgttatgtgcttttttttgtctttctttgatgtcaa 14816923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 66 - 231
Target Start/End: Complemental strand, 15264083 - 15263919
Alignment:
Q  66 tagactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaag 165  Q
    |||| ||||||||||  |||||| || ||| |||||||| ||| |||||||| | |||||||||| | || | |||| |||||| |||||||||| | ||    
T  15264083 tagaatattacttttttcaccctactgccttctcgcgcgtcctgcaaaatttccaaaaatacccccgatctggattatataatccggaccagattattag 15263984  T
Q  166 ttattttcggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaa 231  Q
    | ||||| |||||   |||||||||| ||||||| |||  |||| | |||||||||||||||||||    
T  15263983 tgatttt-ggaaaattaaattcggacaagatgttatgtgcttttttttgtctttctttgatgtcaa 15263919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 66 - 162
Target Start/End: Complemental strand, 38257867 - 38257771
Alignment:
Q  66 tagactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgt 162  Q
    ||||||||||||||| |||||||| | ||| |||||| ||||| ||||| || |  |||||||||||||||| ||||| ||||  ||||||||||||    
T  38257867 tagactattactttttccaccctgtttccttctcgcgtgccctgcaaaaattccataaatacccctggtccggattacgtaattcggaccagattgt 38257771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 66 - 162
Target Start/End: Complemental strand, 15032976 - 15032880
Alignment:
Q  66 tagactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgt 162  Q
    ||||||||||| |||  ||||||| | ||| |||| ||||||| ||||| || |  |||||||||||||||| ||||| ||||| ||||||||||||    
T  15032976 tagactattacctttttcaccctgttgccttctcgtgcgccctgcaaaaatttcataaatacccctggtccggattacgtaatccggaccagattgt 15032880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 234
Target Start/End: Complemental strand, 25529460 - 25529377
Alignment:
Q  151 ggaccagattgtaagttattttcggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaaggg 234  Q
    |||||||||||| ||| |||| |||||   ||||| |||||||||| || |||  |||| ||||||||||||||||||||||||    
T  25529460 ggaccagattgttagtgatttccggaatacgaaatccggaccagatattatgtgcttttttgtgtctttctttgatgtcaaggg 25529377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 162
Target Start/End: Original strand, 26791696 - 26791792
Alignment:
Q  66 tagactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgt 162  Q
    |||||||||| ||||||||||||| | ||| |||||||| ||| ||||| || |  |||||||||||||  | ||||| |||||  |||||||||||    
T  26791696 tagactattatttttcccaccctgttgccttctcgcgcgtcctgcaaaaattccataaatacccctggtttggattacgtaatccagaccagattgt 26791792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 162
Target Start/End: Complemental strand, 7255832 - 7255738
Alignment:
Q  68 gactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgt 162  Q
    ||||||||||||||||||  || | ||| ||||||||| || ||||| || |  ||||||||||||| || ||||| ||||| |||||| |||||    
T  7255832 gactattacttttcccactttgttgccttctcgcgcgctctgcaaaaattccataaatacccctggttcggattacgtaatccggaccaaattgt 7255738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 114
Target Start/End: Complemental strand, 29332688 - 29332640
Alignment:
Q  66 tagactattacttttcccaccctgctacctcctcgcgcgccctacaaaa 114  Q
    ||||||||||||||||||||| || | ||| |||||||||||| |||||    
T  29332688 tagactattacttttcccaccttgttgccttctcgcgcgccctgcaaaa 29332640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 162
Target Start/End: Complemental strand, 35585495 - 35585399
Alignment:
Q  66 tagactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgt 162  Q
    |||||||||| |||||||||||||   ||| |||||| ||||| ||||| || |  ||| |||||||||||| ||||  |||||  |||||||||||    
T  35585495 tagactattatttttcccaccctgtagccttctcgcgtgccctgcaaaaattccataaacacccctggtccggattatgtaatccagaccagattgt 35585399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 116; Significance: 4e-59; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 67 - 234
Target Start/End: Original strand, 12723368 - 12723535
Alignment:
Q  67 agactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagt 166  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| || ||||||||||| ||| |||||||| |||    
T  12723368 agactattacttttcccaccctgctgcctcctcgcgcgccctgcaaaatttactaaaatacccctggttcggattacataatccggatcagattgttagt 12723467  T
Q  167 tattttcggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaaggg 234  Q
     |||| || |||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||    
T  12723468 gatttccgaaaacagaaatccgaaccagatgttatgtaattttctgtgtctttctttgatgtcaaggg 12723535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 68 - 234
Target Start/End: Original strand, 18808677 - 18808843
Alignment:
Q  68 gactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagtt 167  Q
    ||||||||||||||||||| |||| ||||||| |||||||| |||||||||||||||||||| ||||||  ||||||||||| ||| |||||||| |||     
T  18808677 gactattacttttcccaccatgctgcctcctcacgcgccctgcaaaatttactaaaatacccttggtccagattacataatccggatcagattgttagtg 18808776  T
Q  168 attttcggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaaggg 234  Q
    ||||  ||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  18808777 atttctggaaatagaaattcggaccagatgttatgtaatttcctgtgtctttctttgatgtcaaggg 18808843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 68 - 234
Target Start/End: Complemental strand, 16514033 - 16513867
Alignment:
Q  68 gactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagtt 167  Q
    |||||||||||||||||||||||| ||| |||||||||||| |||||||| | ||||||||  || |||| ||||||||||| ||| |||||||| |||     
T  16514033 gactattacttttcccaccctgctgccttctcgcgcgccctgcaaaatttccaaaaatacctttgatccggattacataatccggatcagattgttagtg 16513934  T
Q  168 attttcggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaaggg 234  Q
    ||||||| |||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  16513933 attttcgaaaacagaaatccggaccatatgttatgtaattttctgtgtctttctttgatgtcaaggg 16513867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 67 - 234
Target Start/End: Original strand, 12784851 - 12785018
Alignment:
Q  67 agactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagt 166  Q
    ||||||||||||||||||||||||| ||||||||||| |||| ||  ||||||||||||||||||||| || ||||||||||| ||| | ||| || |||    
T  12784851 agactattacttttcccaccctgctgcctcctcgcgcaccctgcaccatttactaaaatacccctggttcggattacataatccggatcggatggttagt 12784950  T
Q  167 tattttcggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaaggg 234  Q
     |||| || |||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||    
T  12784951 gatttccgaaaacagaaatccgaaccagatgttatgtaattttctgtgtctttctttgatgtcaaggg 12785018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 67 - 227
Target Start/End: Complemental strand, 13822512 - 13822353
Alignment:
Q  67 agactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagt 166  Q
    |||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||| |||| |||| || ||     
T  13822512 agactattacttttcccaccttgctgcctcctcgcgcgccctgcaaaatttactaaaatacccctggtccggattacgtaatccggactagatagttag- 13822414  T
Q  167 tattttcggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatg 227  Q
    | |||||  ||||| |||| | ||||||||||| |||||||||| ||||||||||||||||    
T  13822413 tgttttcaaaaacaaaaatccagaccagatgttatgtaattttcggtgtctttctttgatg 13822353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 110 - 231
Target Start/End: Original strand, 3556361 - 3556482
Alignment:
Q  110 caaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagttattttcggaaacagaaattcggaccagatgttgtgtaatttt 209  Q
    ||||||||||||||||||||||||| || ||||| || ||||||||||||||| ||||||||||| |||||||||| | ||||||||||| ||||| |||    
T  3556361 caaaatttactaaaatacccctggttcggattacttattctggaccagattgttagttattttcgaaaacagaaatccagaccagatgttatgtaacttt 3556460  T
Q  210 ctgtgtctttctttgatgtcaa 231  Q
     |||||||||||||||||||||    
T  3556461 atgtgtctttctttgatgtcaa 3556482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 73 - 232
Target Start/End: Original strand, 26278744 - 26278902
Alignment:
Q  73 ttacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagttatttt 172  Q
    |||||||||| |||||| | ||| ||||||||||||  ||||||| ||||||||||||||||||| |||| |||||| |||||||||||| ||| || |     
T  26278744 ttacttttcctaccctgtttccttctcgcgcgccctgtaaaattt-ctaaaatacccctggtccggattatataatccggaccagattgttagtgatatc 26278842  T
Q  173 cggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaag 232  Q
    ||||||  ||||||||||||||||||| |||  |||| ||||||||| ||||||||||||    
T  26278843 cggaaaacgaaattcggaccagatgttatgtgtttttttgtgtctttttttgatgtcaag 26278902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 65 - 231
Target Start/End: Original strand, 8197103 - 8197269
Alignment:
Q  65 atagactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaa 164  Q
    ||||||||||||||||||||||| ||| ||| ||||| ||| || ||||||||||||||||||| |||||  | ||||||||||| |||||||||||| |    
T  8197103 atagactattacttttcccaccccgctgccttctcgcacgctctgcaaaatttactaaaatacctctggtttggattacataatccggaccagattgtta 8197202  T
Q  165 gttattttcggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaa 231  Q
    || |||| ||||||||  | | ||||  ||||||   |||||||| |||||||||||||||||||||    
T  8197203 gtgatttccggaaacatgattccggaaaagatgtatagtaattttttgtgtctttctttgatgtcaa 8197269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 66 - 233
Target Start/End: Original strand, 8734391 - 8734557
Alignment:
Q  66 tagactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaag 165  Q
    ||||||||||||||| ||||  |||| ||| |||||||  |||  ||||||||||||||||  ||||||||| ||||||||||| |||  ||||||| ||    
T  8734391 tagactattactttttccacg-tgct-ccttctcgcgcatcctgtaaaatttactaaaatattcctggtccggattacataatccggattagattgttag 8734488  T
Q  166 ttattttcggaaacagaaattcggaccagatgttgtgtaa-ttttctgtgtctttctttgatgtcaagg 233  Q
    | ||||| ||||||||||||||||| ||||| || ||||| |||| |||||||||||||||||||||||    
T  8734489 tgatttttggaaacagaaattcggatcagatattatgtaatttttttgtgtctttctttgatgtcaagg 8734557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 67 - 234
Target Start/End: Complemental strand, 8301203 - 8301036
Alignment:
Q  67 agactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagt 166  Q
    |||||||||||||||||||||| |  ||| || || ||||||   |  || || ||||||||| | ||||| |||| |||||| ||| |||||||| |||    
T  8301203 agactattacttttcccaccctacagccttcttgcacgccctgtgattttgaccaaaataccctttgtccggattatataatccggatcagattgttagt 8301104  T
Q  167 tattttcggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaaggg 234  Q
     |||| || |||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||    
T  8301103 gatttccgaaaacagaaatccgaaccagatgttatgtaattttctgtgtctttctttgatgtcaaggg 8301036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 67 - 214
Target Start/End: Original strand, 15858584 - 15858731
Alignment:
Q  67 agactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagt 166  Q
    |||||||||||||||||||||||||  | |||||| | |||  ||||||||| ||||||||  |||||||| |||||| |||| |||  ||||||| |||    
T  15858584 agactattacttttcccaccctgctgtcccctcgcacacccagcaaaatttattaaaatacatctggtccggattacacaatccggattagattgttagt 15858683  T
Q  167 tattttcggaaacagaaattcggaccagatgttgtgtaattttctgtg 214  Q
     |||| || ||||||||||||| |||||||||| ||||||||||||||    
T  15858684 gatttccgaaaacagaaattcgaaccagatgttatgtaattttctgtg 15858731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 67 - 234
Target Start/End: Complemental strand, 37030689 - 37030522
Alignment:
Q  67 agactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagt 166  Q
    |||||||||||||| ||||| |||| ||| |||||| | ||| |||||||| | ||| ||||||||||||| |||| |||||| |||||||||||| |||    
T  37030689 agactattactttttccaccatgctgccttctcgcgtgtcctgcaaaatttccaaaagtacccctggtccggattatataatccggaccagattgttagt 37030590  T
Q  167 tattttcggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaaggg 234  Q
     || | ||||||   |||| ||||||||||||| ||   |||| ||||||||||||||||||||||||    
T  37030589 gatatccggaaaacaaaatccggaccagatgttatgcgcttttttgtgtctttctttgatgtcaaggg 37030522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 71 - 231
Target Start/End: Complemental strand, 2606419 - 2606258
Alignment:
Q  71 tattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagttatt 170  Q
    |||||||||||||||| |  | ||| |||||||||| | |||||||| | |||||||||||||||||||||| ||||||||| || |||||| ||| |||    
T  2606419 tattacttttcccaccttaatgccttctcgcgcgccttccaaaatttccaaaaatacccctggtccgaattatataatctggtccggattgttagtgatt 2606320  T
Q  171 ttcggaaaca-gaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaa 231  Q
    ||| | ||||  ||||  |||| ||||||| |||  |||| |||||||||||||||||||||    
T  2606319 ttccggaacattaaatctggacaagatgttatgtgcttttttgtgtctttctttgatgtcaa 2606258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 68 - 161
Target Start/End: Complemental strand, 29047455 - 29047362
Alignment:
Q  68 gactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattg 161  Q
    |||||||||||||||||||||| | ||| |||||||||||| ||||| || | ||||||||||||||||| ||||| || || |||||||||||    
T  29047455 gactattacttttcccaccctgttgccttctcgcgcgccctgcaaaaattccaaaaatacccctggtccggattacgtattccggaccagattg 29047362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 66 - 159
Target Start/End: Original strand, 37012562 - 37012655
Alignment:
Q  66 tagactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagat 159  Q
    |||||||||| ||||| |||| |||| |||  ||||||||||| ||||||||| |||||||||||||||||| ||| ||||||| |||||||||    
T  37012562 tagactattatttttctcaccttgctgccttttcgcgcgccctgcaaaatttattaaaatacccctggtccggattgcataatccggaccagat 37012655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 68 - 162
Target Start/End: Complemental strand, 5344172 - 5344078
Alignment:
Q  68 gactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgt 162  Q
    ||||||||||||||||||| || | ||| |||||||||||| ||||| || |  |||||||||||||||| ||||| ||||| ||||||||||||    
T  5344172 gactattacttttcccaccatgttgccttctcgcgcgccctgcaaaaattccataaatacccctggtccggattacgtaatccggaccagattgt 5344078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 66 - 162
Target Start/End: Complemental strand, 1711651 - 1711555
Alignment:
Q  66 tagactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgt 162  Q
    ||||||||||||||||||||| || | ||| ||| |||||||| ||||| || |  |||||||||||||||| ||||| ||||| ||||||||||||    
T  1711651 tagactattacttttcccaccatgttgccttctcacgcgccctgcaaaaatttcataaatacccctggtccggattacgtaatcaggaccagattgt 1711555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 168 - 234
Target Start/End: Complemental strand, 38679792 - 38679726
Alignment:
Q  168 attttcggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaaggg 234  Q
    |||| ||||||||  ||| ||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  38679792 atttccggaaacaacaatccggaccagatgttatgtaattttttgtgtctttctttgatgtcaaggg 38679726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 73 - 234
Target Start/End: Complemental strand, 25977560 - 25977399
Alignment:
Q  73 ttacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagttatttt 172  Q
    |||||||||||   ||||  ||| ||||||||||||  ||||||||| ||||||||||||||  | |||| |||||| | | |||||||| ||| ||       
T  25977560 ttacttttccctaactgccgccttctcgcgcgccctgtaaaatttacaaaaatacccctggtttggattatataatccgtagcagattgttagtgatacc 25977461  T
Q  173 cggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaaggg 234  Q
    ||||||  |||||  ||| |||||||| |||  |||| ||||||||||||||||||||||||    
T  25977460 cggaaaacgaaatcaggatcagatgttatgtggttttttgtgtctttctttgatgtcaaggg 25977399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 68 - 231
Target Start/End: Original strand, 37883125 - 37883291
Alignment:
Q  68 gactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagtt 167  Q
    ||||||||||||| |||||||  | ||| |||||||||||| |||||||| | |||||| || ||||||| |||| |||||  |||||||||||| |||     
T  37883125 gactattactttttccaccctattgccttctcgcgcgccctgcaaaattttcaaaaataaccatggtccggattatataatgcggaccagattgttagtg 37883224  T
Q  168 attttcggaaaca---gaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaa 231  Q
    ||||  | ||| |    |||| ||||||||||| | |||  |||| ||||| |||||||||||||||    
T  37883225 atttctgaaaaaaaattaaatccggaccagatggtatgtgcttttttgtgtatttctttgatgtcaa 37883291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 73 - 176
Target Start/End: Complemental strand, 9715727 - 9715624
Alignment:
Q  73 ttacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagttatttt 172  Q
    ||||||||  ||||||||| ||| |||||||| ||| ||| ||||   |||||||||||||||||||||| ||||||  ||||||||||| ||| ||||     
T  9715727 ttacttttttcaccctgctgccttctcgcgcgtcctgcaatatttttgaaaatacccctggtccgaattatataatccagaccagattgttagtgatttc 9715628  T
Q  173 cgga 176  Q
    ||||    
T  9715627 cgga 9715624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 111 - 234
Target Start/End: Original strand, 27114045 - 27114168
Alignment:
Q  111 aaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagttattttcggaaacagaaattcggaccagatgttgtgtaattttc 210  Q
    ||||||| | |||||||| || ||| |||||| ||| || |||||||||||| ||| ||||||||||   ||||| | || ||||| || |||  ||||     
T  27114045 aaaattttcaaaaatacctcttgtctgaattatatattccggaccagattgttagtgattttcggaatacgaaatccagatcagatattatgtgtttttt 27114144  T
Q  211 tgtgtctttctttgatgtcaaggg 234  Q
    ||||||||||||||||||||||||    
T  27114145 tgtgtctttctttgatgtcaaggg 27114168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 73 - 163
Target Start/End: Complemental strand, 8551334 - 8551244
Alignment:
Q  73 ttacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgta 163  Q
    ||||||||||||||||||| ||| || || |||||| ||||| || | |||||| ||||| ||||||||| |||| |  ||||||||||||    
T  8551334 ttacttttcccaccctgctgccttcttgcacgccctgcaaaaatttcaaaaatatccctgatccgaattatataaaccagaccagattgta 8551244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 67 - 149
Target Start/End: Original strand, 13654679 - 13654761
Alignment:
Q  67 agactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatc 149  Q
    |||||||||||||||||| |||||| ||| |||| || |  |  ||||||||||||||||||||||||| | |||| ||||||    
T  13654679 agactattacttttcccatcctgctgccttctcgtgcactatgtaaaatttactaaaatacccctggtctggattatataatc 13654761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 133
Target Start/End: Complemental strand, 11720347 - 11720287
Alignment:
Q  73 ttacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctgg 133  Q
    |||||||||||||||| || |||  ||||||||||| |||||||||| |||||| ||||||    
T  11720347 ttacttttcccaccctactgccttttcgcgcgccctgcaaaatttacaaaaatatccctgg 11720287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 231
Target Start/End: Original strand, 37012646 - 37012690
Alignment:
Q  187 cggaccagatgttgtgtaattttctgtgtctttctttgatgtcaa 231  Q
    ||||||||||||| |||| ||||||||||||||||||||| ||||    
T  37012646 cggaccagatgttatgtacttttctgtgtctttctttgatttcaa 37012690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 117
Target Start/End: Original strand, 24203168 - 24203213
Alignment:
Q  72 attacttttcccaccctgctacctcctcgcgcgccctacaaaattt 117  Q
    ||||||||||||||||||  |||| ||| |||||||||||||||||    
T  24203168 attacttttcccaccctgtgaccttctcccgcgccctacaaaattt 24203213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 104; Significance: 5e-52; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 67 - 234
Target Start/End: Complemental strand, 38707655 - 38707488
Alignment:
Q  67 agactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagt 166  Q
    ||||||||||||||||||| ||||| ||| ||||||| ||||  ||||||||||||||||||| ||||||| ||||||||||| ||| |||||||| |||    
T  38707655 agactattacttttcccactctgctgccttctcgcgcaccctgaaaaatttactaaaatacccatggtccggattacataatccggatcagattgttagt 38707556  T
Q  167 tattttcggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaaggg 234  Q
     |||| |||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  38707555 gatttccggaaacataaattcggacaagatgttatgtaattttctgtgtctttctttgatgtcaaggg 38707488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 68 - 234
Target Start/End: Original strand, 15911481 - 15911647
Alignment:
Q  68 gactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagtt 167  Q
    |||||||||||||||||||||||| ||| ||||||| |||| |||||||||||||||||  ||| ||| ||||||||||||  ||| |||||||| |||     
T  15911481 gactattacttttcccaccctgctgccttctcgcgcaccctgcaaaatttactaaaatataccttgtctgaattacataattcggatcagattgttagtg 15911580  T
Q  168 attttcggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaaggg 234  Q
    |||| ||||||||||||| | ||||||||||| ||||||||||||||||||||||||||| ||||||    
T  15911581 atttccggaaacagaaatccagaccagatgttatgtaattttctgtgtctttctttgatgccaaggg 15911647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 66 - 234
Target Start/End: Original strand, 45116781 - 45116948
Alignment:
Q  66 tagactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaag 165  Q
    ||||||||||||||||||||| ||||  || |||||||||||| ||||||||||||||||| || ||||||| ||||||||||| | |||||||||| ||    
T  45116781 tagactattacttttcccaccatgctgtcttctcgcgcgccctgcaaaatttactaaaataacc-tggtccggattacataatccgaaccagattgttag 45116879  T
Q  166 ttattttcggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaaggg 234  Q
    | |||| ||||| ||||||| ||||| ||||||| ||||||||| ||||||||||||||||||||||||    
T  45116880 tgatttccggaagcagaaatccggactagatgttatgtaattttatgtgtctttctttgatgtcaaggg 45116948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 68 - 231
Target Start/End: Original strand, 38207188 - 38207345
Alignment:
Q  68 gactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagtt 167  Q
    |||||||| ||||||||||||||| |||||||||||  ||| |||||||||||||||||      ||| | ||||||||||| ||| |||||||| |||     
T  38207188 gactattatttttcccaccctgctgcctcctcgcgcatcctgcaaaatttactaaaata------gtctggattacataatccggatcagattgttagtg 38207281  T
Q  168 attttcggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaa 231  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||||||    
T  38207282 attttcggaaacagaaatccggaccagatgttatgtaattttctgtatctttctttgatgtcaa 38207345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 68 - 232
Target Start/End: Original strand, 6402581 - 6402745
Alignment:
Q  68 gactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagtt 167  Q
    ||||||||||||||||||| |||  ||||||||||| |||| ||||||||||||||||| ||||||| || ||||||||||   || || ||||| |||     
T  6402581 gactattacttttcccaccatgcctcctcctcgcgcaccctgcaaaatttactaaaatatccctggttcggattacataattaagaacatattgttagtg 6402680  T
Q  168 attttcggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaag 232  Q
    | || |||||||||||||  |||||||||||| ||||||||| ||||||||||||||||||||||    
T  6402681 acttccggaaacagaaatcaggaccagatgttatgtaattttatgtgtctttctttgatgtcaag 6402745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 67 - 199
Target Start/End: Original strand, 17304588 - 17304720
Alignment:
Q  67 agactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagt 166  Q
    ||||||||| |||| |||||||||| ||| |||||||||||| ||||||| | ||||||| |||||||| | |||||||||| || |||||||||| |||    
T  17304588 agactattattttttccaccctgctgccttctcgcgcgccctgcaaaattaattaaaataaccctggtctggattacataatttgaaccagattgttagt 17304687  T
Q  167 tattttcggaaacagaaattcggaccagatgtt 199  Q
     |||| || |||||||||| |||||||||||||    
T  17304688 gatttccgaaaacagaaatccggaccagatgtt 17304720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 68 - 138
Target Start/End: Complemental strand, 17138110 - 17138040
Alignment:
Q  68 gactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccga 138  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  17138110 gactattacttttcccaccctgctgcctcctcgcgcgccctataaaatttactaaaatacccctggtccga 17138040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 73 - 231
Target Start/End: Complemental strand, 7943169 - 7943013
Alignment:
Q  73 ttacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagttatttt 172  Q
    |||||||||||||| |||| ||| |||||||  ||| |||||||||||||||||||||||||||   |||||||||| |||| ||||||| ||| ||||     
T  7943169 ttacttttcccaccgtgctgccttctcgcgc--cctgcaaaatttactaaaatacccctggtcctgtttacataatccggactagattgttagtgatttc 7943072  T
Q  173 cggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaa 231  Q
    ||||||  ||||| |||| ||||| ||  ||  |||| |||||||||||||||||||||    
T  7943071 cggaaaacgaaatccggatcagatattacgtgcttttttgtgtctttctttgatgtcaa 7943013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 67 - 196
Target Start/End: Original strand, 44754001 - 44754130
Alignment:
Q  67 agactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagt 166  Q
    |||||||| ||||||| |||||||| ||||||||||  ||||||||||||||||||||||   |||||||| ||||||| ||  ||| |||||||| |||    
T  44754001 agactattccttttcctaccctgctgcctcctcgcgaaccctacaaaatttactaaaatatttctggtccggattacatgattcggaacagattgttagt 44754100  T
Q  167 tattttcggaaacagaaattcggaccagat 196  Q
     ||||||||||| ||||||  |||||||||    
T  44754101 gattttcggaaaaagaaatctggaccagat 44754130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 69 - 231
Target Start/End: Original strand, 13278394 - 13278560
Alignment:
Q  69 actattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagtta 168  Q
    |||||||||||| ||||||||||  || ||||||||||||  ||||||||| |||||||| |||||||| |||| |||||  |||| ||||||| ||| |    
T  13278394 actattactttttccaccctgctgtcttctcgcgcgccctgtaaaatttacaaaaatacctctggtccggattatataattcggactagattgttagtga 13278493  T
Q  169 ttttcggaaacagaaattcggaccagatg----ttgtgtaattttctgtgtctttctttgatgtcaa 231  Q
    | | || |||  ||||| |||||||||||    || |||  |||| |||||||||||||||||||||    
T  13278494 tatccgaaaaacgaaatccggaccagatgttaattatgtgtttttttgtgtctttctttgatgtcaa 13278560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 73 - 230
Target Start/End: Original strand, 18137299 - 18137454
Alignment:
Q  73 ttacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagttatttt 172  Q
    ||||||||||||||||||| ||| |||||||||| | |||||||| | |||||||||||||| || |||| |||||| |||| ||||||| ||| |        
T  18137299 ttacttttcccaccctgctgccttctcgcgcgccttgcaaaatttccaaaaatacccctggttcggattatataatccggacaagattgttagtga---c 18137395  T
Q  173 cggaaacagaaattcggaccaga-tgttgtgtaattttctgtgtctttctttgatgtca 230  Q
    ||||||  ||||||||||||| | |||| |||  |||| |||| |||||||||||||||    
T  18137396 cggaaaacgaaattcggaccatattgttatgtgcttttttgtgcctttctttgatgtca 18137454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 73 - 234
Target Start/End: Complemental strand, 31994505 - 31994345
Alignment:
Q  73 ttacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagttatttt 172  Q
    |||||||| | |||||||| ||| |||||||||||| ||| ||| ||||||||||| | |||| | |||| |||||| |||||||||||| | |  |||     
T  31994505 ttactttttctaccctgctgccttctcgcgcgccctgcaatattcactaaaatacctcaggtctggattatataatccggaccagattgtta-tgctttc 31994407  T
Q  173 cggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaaggg 234  Q
    | ||||  |||||  |||||||||||| |||  |||| |||||||||||||||||| |||||    
T  31994406 cagaaaacgaaatatggaccagatgttatgtgcttttttgtgtctttctttgatgttaaggg 31994345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 183 - 234
Target Start/End: Complemental strand, 17138034 - 17137983
Alignment:
Q  183 aattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaaggg 234  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  17138034 aattcggaccagatgttatgtaattttctgtgtctttatttgatgtcaaggg 17137983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 67 - 231
Target Start/End: Complemental strand, 1210370 - 1210202
Alignment:
Q  67 agactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagt 166  Q
    |||||||||||||| |||||||||| ||| ||  ||| ||||  |||||||| ||||||| | |||||| | | ||||||||  | | |||||||| |||    
T  1210370 agactattactttttccaccctgctgccttcttacgcaccctgtaaaatttattaaaatagctctggtcgggaatacataattcgtatcagattgttagt 1210271  T
Q  167 tattttcggaa----acagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaa 231  Q
     ||||  ||||    | | |||||| ||||||||||| |||  ||||||||||||||||||||||||||    
T  1210270 gatttctggaagaaaaaataaattcagaccagatgttatgtgcttttctgtgtctttctttgatgtcaa 1210202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 77 - 131
Target Start/End: Original strand, 1114501 - 1114555
Alignment:
Q  77 ttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccct 131  Q
    |||||||||||| |||||| ||||||||||||||||||||| | |||||||||||    
T  1114501 ttttcccaccctactaccttctcgcgcgccctacaaaatttccaaaaatacccct 1114555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 234
Target Start/End: Complemental strand, 30490993 - 30490954
Alignment:
Q  195 atgttgtgtaattttctgtgtctttctttgatgtcaaggg 234  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  30490993 atgttatgtaattttctgtgtctttctttgatgtcaaggg 30490954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 68 - 162
Target Start/End: Complemental strand, 5464814 - 5464720
Alignment:
Q  68 gactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgt 162  Q
    ||||||||||||||||||| |  | ||| ||||||||| || ||||| || |  |||||||||||||||| ||||  |||||||||||| |||||    
T  5464814 gactattacttttcccaccttattgccttctcgcgcgctctgcaaaaatttcataaatacccctggtccggattatgtaatctggaccaaattgt 5464720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 162
Target Start/End: Complemental strand, 12287136 - 12287041
Alignment:
Q  67 agactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgt 162  Q
    ||||||||||||||||||||||||    | |||||| ||||| ||||||   | |||||| |||||||||| ||||  ||||||| ||||||||||    
T  12287136 agactattacttttcccaccctgcctgtttctcgcgtgccctgcaaaataaccaaaaatatccctggtccggattatgtaatctgaaccagattgt 12287041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 136
Target Start/End: Original strand, 24167093 - 24167158
Alignment:
Q  71 tattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtcc 136  Q
    ||||||||||||||| ||||| ||| ||| |||| ||| ||||| || | ||||||||||||||||    
T  24167093 tattacttttcccactctgctgccttctcacgcgtcctgcaaaaatttcaaaaatacccctggtcc 24167158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 234
Target Start/End: Original strand, 44759923 - 44759956
Alignment:
Q  201 tgtaattttctgtgtctttctttgatgtcaaggg 234  Q
    |||||||||||||||||||||||||| |||||||    
T  44759923 tgtaattttctgtgtctttctttgatatcaaggg 44759956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 101; Significance: 3e-50; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 66 - 234
Target Start/End: Complemental strand, 10509663 - 10509495
Alignment:
Q  66 tagactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaag 165  Q
    ||||||||||||||| |||||||||| ||| ||||||| || | |||||||||||||||||| ||||||||| ||||||||||| |||  ||||||| ||    
T  10509663 tagactattactttttccaccctgctgccttctcgcgccccttgcaaaatttactaaaatactcctggtccggattacataatccggattagattgttag 10509564  T
Q  166 ttattttcggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaaggg 234  Q
    | ||||||||||||||| ||  |||||||||||| ||||||||||||||||||||||||||||||||||    
T  10509563 tgattttcggaaacagacatctggaccagatgttatgtaattttctgtgtctttctttgatgtcaaggg 10509495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 68 - 234
Target Start/End: Original strand, 32529503 - 32529670
Alignment:
Q  68 gactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattg-taagt 166  Q
    ||||||||||||| |||||||||| ||| |||||| |||||  ||||||||||||||||||||||||||| ||||||||||  ||||||||||| |||||    
T  32529503 gactattactttttccaccctgctgccttctcgcgtgccctgtaaaatttactaaaatacccctggtccggattacataattcggaccagattgttaagt 32529602  T
Q  167 tattttcggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaaggg 234  Q
     |||| ||||||||||||||||||||||||||| | |  |||||||||||||||||||||||||||||    
T  32529603 gatttccggaaacagaaattcggaccagatgttatatgcttttctgtgtctttctttgatgtcaaggg 32529670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 67 - 234
Target Start/End: Original strand, 227328 - 227493
Alignment:
Q  67 agactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagt 166  Q
    ||||| |||||||||||||| |||| |||||||||| ||| | |||||||||||||||||| ||||||||| ||||||||||| ||||   ||||| |||    
T  227328 agacttttacttttcccaccatgctgcctcctcgcgtgccttgcaaaatttactaaaatactcctggtccggattacataatccggac--tattgttagt 227425  T
Q  167 tattttcggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaaggg 234  Q
     |||| || |||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  227426 gatttgcgaaaacagaaatccggaccagatgttatgtaattttctgtgtttttctttgatgtcaaggg 227493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 67 - 215
Target Start/End: Original strand, 53814648 - 53814796
Alignment:
Q  67 agactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagt 166  Q
    ||||||||||||||||||||||||| ||| |||||||| ||| ||||||||||||||||| ||||||||||  |||||||||   ||||||||||| |||    
T  53814648 agactattacttttcccaccctgctgccttctcgcgcgtcctgcaaaatttactaaaataaccctggtccgggttacataattcagaccagattgttagt 53814747  T
Q  167 tattttcggaaacagaaattcggaccagatgttgtgtaattttctgtgt 215  Q
     |||| ||||||||||||| ||||||||||||| |||||||||||||||    
T  53814748 gatttccggaaacagaaatgcggaccagatgttatgtaattttctgtgt 53814796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 69 - 234
Target Start/End: Original strand, 39586272 - 39586437
Alignment:
Q  69 actattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagtta 168  Q
    ||||||||||||||||||||  | ||| |||||||||||| |||||||| |||||||| ||||| |||| |||||||||||   || ||||||| ||| |    
T  39586272 actattacttttcccaccctattgccttctcgcgcgccctgcaaaattttctaaaataaccctgatccggattacataatccatacaagattgttagtga 39586371  T
Q  169 ttttcggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaaggg 234  Q
    ||| || |||||||||| ||||||||||||| ||||||||||  ||||||||||||||||||||||    
T  39586372 tttccgaaaacagaaatccggaccagatgttatgtaattttccatgtctttctttgatgtcaaggg 39586437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 73 - 234
Target Start/End: Complemental strand, 41194151 - 41193990
Alignment:
Q  73 ttacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagttatttt 172  Q
    ||||||||||||||||||| ||| |||||||||||  |||||||||||||||||   |||||||| ||||||||||| |||||||||||| ||| ||||     
T  41194151 ttacttttcccaccctgctgccttctcgcgcgcccggcaaaatttactaaaatatttctggtccggattacataatccggaccagattgttagtgatttc 41194052  T
Q  173 cggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaaggg 234  Q
    ||||||  |||||  |||||||||||| |||  |||| ||||||||||||||||||||||||    
T  41194051 cggaaaacgaaatcaggaccagatgttatgtgtttttatgtgtctttctttgatgtcaaggg 41193990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 73 - 231
Target Start/End: Complemental strand, 49166538 - 49166380
Alignment:
Q  73 ttacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagttatttt 172  Q
    |||||||||||||  || | ||| |||||||||| | ||||||||||||||||| || ||||||| |||||||||||||||||||||||| ||| |||||    
T  49166538 ttacttttcccactatgttgccttctcgcgcgccttgcaaaatttactaaaatatccatggtccggattacataatctggaccagattgttagtgatttt 49166439  T
Q  173 cggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaa 231  Q
      ||||  ||||| ||||||||||||| |||  ||||||||||||||||||||||||||    
T  49166438 tagaaaacgaaatccggaccagatgttatgtgtttttctgtgtctttctttgatgtcaa 49166380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 68 - 234
Target Start/End: Original strand, 149025 - 149191
Alignment:
Q  68 gactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagtt 167  Q
    ||||||||||||| |||||||||| ||| |||||||| |||  |||||||||||||||| || ||||| | ||||  ||||| |||||| ||||| |||     
T  149025 gactattactttttccaccctgctgccttctcgcgcgtcctgaaaaatttactaaaataaccatggtctggattatgtaatccggaccaaattgttagtg 149124  T
Q  168 attttcggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaaggg 234  Q
     ||| | ||||||||||| ||||||||||||| ||||||||| |||||||||||||| |||||||||    
T  149125 gtttccagaaacagaaatccggaccagatgttatgtaattttttgtgtctttctttgctgtcaaggg 149191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 67 - 234
Target Start/End: Original strand, 40936914 - 40937081
Alignment:
Q  67 agactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagt 166  Q
    |||||||||||||||||||||| || ||| ||||||| ||||  |||||||| ||||||| ||||||| |  ||||  ||||| | |||||||||| |||    
T  40936914 agactattacttttcccaccctactgccttctcgcgcaccctgtaaaatttattaaaataaccctggttcagattatgtaatccgaaccagattgttagt 40937013  T
Q  167 tattttcggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaaggg 234  Q
     || | |||||||||||||  |||||||||||| |||||||||||||||||||||||| | |||||||    
T  40937014 gatatccggaaacagaaatatggaccagatgttatgtaattttctgtgtctttctttgctatcaaggg 40937081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 78 - 231
Target Start/End: Original strand, 39353013 - 39353166
Alignment:
Q  78 tttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagttattttcggaa 177  Q
    |||||||||||||| |||  |||||||||||  ||||||| | ||||||||||||||||| |||| |||||| |||| ||||||| ||| ||||||| ||    
T  39353013 tttcccaccctgctgccttatcgcgcgccctgtaaaattttcaaaaatacccctggtccggattatataatccggacaagattgttagtgattttcgaaa 39353112  T
Q  178 acagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaa 231  Q
    |   |||| ||||||||||||| |||  |||| |||||||||||||||||||||    
T  39353113 aattaaatccggaccagatgttatgttcttttttgtgtctttctttgatgtcaa 39353166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 66 - 232
Target Start/End: Complemental strand, 26502633 - 26502467
Alignment:
Q  66 tagactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaag 165  Q
    ||||||||||||||||||||||| |  ||| ||| |||||||||  |  || || ||||||||| | ||||  |||  |||||| ||| || ||||| |     
T  26502633 tagactattacttttcccaccctacagccttctcacgcgccctatgattttgaccaaaataccctttgtccagattgtataatccggatcaaattgttaa 26502534  T
Q  166 ttattttcggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaag 232  Q
    | |||||||||||||||||| ||||| ||||||| |||||||||| |||||||||||||||||||||    
T  26502533 tgattttcggaaacagaaatccggactagatgttatgtaattttccgtgtctttctttgatgtcaag 26502467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 67 - 176
Target Start/End: Complemental strand, 36403120 - 36403011
Alignment:
Q  67 agactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagt 166  Q
    ||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||| | || |||| |||||| ||| || ||||| |||    
T  36403120 agactattacttttctcaccctgctgcctcctcgcgcgccctgcaaaatttactaaaatacccctgattcggattatataatccggatcaaattgttagt 36403021  T
Q  167 tattttcgga 176  Q
     |||| ||||    
T  36403020 gatttccgga 36403011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 65 - 166
Target Start/End: Complemental strand, 47375161 - 47375060
Alignment:
Q  65 atagactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaa 164  Q
    ||||||||||||||||||||||||| | ||| |||||||||||| ||||| || |  |||||| ||||||||||||||| ||||| ||||||||||||||    
T  47375161 atagactattacttttcccaccctgatgccttctcgcgcgcccttcaaaaatttcataaatacacctggtccgaattacgtaatccggaccagattgtaa 47375062  T
Q  165 gt 166  Q
    ||    
T  47375061 gt 47375060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 115 - 234
Target Start/End: Original strand, 41174565 - 41174683
Alignment:
Q  115 tttactaaaatacccctggtccgaattacataatctggaccagattgtaagttattttcggaaacagaaattcggaccagatgttgtgtaattttctgtg 214  Q
    ||||||||||||||||||||||| ||||||||||| ||| ||||||||  || |||| | |||  || ||| | ||||||||||| ||||||||| ||||    
T  41174565 tttactaaaatacccctggtccggattacataatccggatcagattgtttgtgatttccagaat-agtaatccagaccagatgttatgtaattttttgtg 41174663  T
Q  215 tctttctttgatgtcaaggg 234  Q
    ||||||||||||||||||||    
T  41174664 tctttctttgatgtcaaggg 41174683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 67 - 159
Target Start/End: Original strand, 47646649 - 47646741
Alignment:
Q  67 agactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagat 159  Q
    |||||||||||||||||||| |||| ||| |||| || || | ||||||||||||||||||||||  |||| ||||||||||| |||||||||    
T  47646649 agactattacttttcccaccatgctgccttctcgtgcaccgtgcaaaatttactaaaatacccctattccggattacataatccggaccagat 47646741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 110 - 234
Target Start/End: Original strand, 6936215 - 6936340
Alignment:
Q  110 caaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagt-tattttcggaaacagaaattcggaccagatgttgtgtaattt 208  Q
    |||||||| | |||||||||||||||   |||| |||||| ||||| |||||| ||| | ||| | ||||   |||||||||||||||||| ||| ||||    
T  6936215 caaaatttccaaaaatacccctggtcttgattatataatccggacccgattgttagtatgtttccagaaaacaaaattcggaccagatgttatgtgattt 6936314  T
Q  209 tctgtgtctttctttgatgtcaaggg 234  Q
    | ||||||||||||||||||||||||    
T  6936315 tttgtgtctttctttgatgtcaaggg 6936340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 71 - 234
Target Start/End: Complemental strand, 31765634 - 31765470
Alignment:
Q  71 tattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagttatt 170  Q
    |||||||||| ||| | |||| ||| |||||||||||| |||||||| | |||||| |||||||||| |||| |||||  |||||| ||||| ||| |||    
T  31765634 tattactttttccatcttgctgccttctcgcgcgccctgcaaaattttcaaaaatatccctggtccggattatataattcggaccaaattgttagtgatt 31765535  T
Q  171 ttcggaaacagaaattcggaccaga-tgttgtgtaattttctgtgtctttctttgatgtcaaggg 234  Q
    |  |||||  ||||| ||||||| | |||| |||  |||| ||||  ||||||||||||||||||    
T  31765534 tctggaaaatgaaatccggaccatattgttatgtgtttttttgtgcttttctttgatgtcaaggg 31765470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 69 - 162
Target Start/End: Complemental strand, 49440699 - 49440606
Alignment:
Q  69 actattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgt 162  Q
    |||||||||||| |||||||| | ||| |||||||||||| ||||| || |  ||||||| |||||||| ||||| ||||| ||||||||||||    
T  49440699 actattactttttccaccctgttgccttctcgcgcgccctgcaaaaatttcataaatacctctggtccggattacgtaatccggaccagattgt 49440606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 187 - 234
Target Start/End: Original strand, 47646732 - 47646779
Alignment:
Q  187 cggaccagatgttgtgtaattttctgtgtctttctttgatgtcaaggg 234  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  47646732 cggaccagatgttatgtgattttctgtgtctttctttgatgtcaaggg 47646779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 68 - 162
Target Start/End: Complemental strand, 44208019 - 44207925
Alignment:
Q  68 gactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgt 162  Q
    |||||||||||||||||||||| | ||| |||||||||||| ||||| || |  ||||||| ||||| || ||||  |||||| |||||||||||    
T  44208019 gactattacttttcccaccctgttgccttctcgcgcgccctgcaaaaattccataaatacctctggttcggattatgtaatcttgaccagattgt 44207925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 71 - 137
Target Start/End: Complemental strand, 21980327 - 21980261
Alignment:
Q  71 tattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccg 137  Q
    |||||| |||||||||||||||||| |||||||||||| ||||| || ||| |||| || |||||||    
T  21980327 tattacatttcccaccctgctaccttctcgcgcgccctgcaaaaattcctataatatccatggtccg 21980261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 71 - 137
Target Start/End: Complemental strand, 22002758 - 22002692
Alignment:
Q  71 tattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccg 137  Q
    |||||| |||||||||||||||||| |||||||||||| ||||| || ||| |||| || |||||||    
T  22002758 tattacatttcccaccctgctaccttctcgcgcgccctgcaaaaattcctataatatccatggtccg 22002692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 192 - 234
Target Start/End: Complemental strand, 47014032 - 47013990
Alignment:
Q  192 cagatgttgtgtaattttctgtgtctttctttgatgtcaaggg 234  Q
    |||||||||||||||||| || |||||||||||||||||||||    
T  47014032 cagatgttgtgtaattttttgcgtctttctttgatgtcaaggg 47013990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 162
Target Start/End: Original strand, 16481091 - 16481186
Alignment:
Q  66 tagactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgt 162  Q
    ||||||||||||||||| |||||| |  || |||||||||| |  |||| || |  |||||||||||||||  ||||| ||||||||||||||||||    
T  16481091 tagactattacttttcc-accctgttgtcttctcgcgcgccttgtaaaaattccataaatacccctggtccagattacgtaatctggaccagattgt 16481186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 162
Target Start/End: Original strand, 9126732 - 9126827
Alignment:
Q  67 agactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgt 162  Q
    |||||||||||||||  ||| || | ||| |||||||||||| ||||| || | ||||||||| ||||||| ||||| || || | ||||||||||    
T  9126732 agactattacttttctaaccatgttgcctactcgcgcgccctgcaaaaattccaaaaatacccttggtccggattacgtattccgaaccagattgt 9126827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 162
Target Start/End: Original strand, 9134839 - 9134934
Alignment:
Q  67 agactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgt 162  Q
    |||||||||||||||  ||| || | ||| |||||||||||| ||||| || | ||||||||| ||||||| ||||| || || | ||||||||||    
T  9134839 agactattacttttctaaccatgttgcctactcgcgcgccctgcaaaaattccaaaaatacccttggtccggattacgtattccgaaccagattgt 9134934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 117
Target Start/End: Original strand, 18875737 - 18875783
Alignment:
Q  71 tattacttttcccaccctgctacctcctcgcgcgccctacaaaattt 117  Q
    ||||||||||||||||||||| ||| ||||| |||||| ||||||||    
T  18875737 tattacttttcccaccctgctgccttctcgcacgccctccaaaattt 18875783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 95; Significance: 1e-46; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 66 - 232
Target Start/End: Original strand, 31271046 - 31271211
Alignment:
Q  66 tagactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaag 165  Q
    |||| |||||||||||||||| |||| ||| |||||||||||| ||||||||||||||||| ||||||| || ||||||||||| |||||||||||| ||    
T  31271046 tagattattacttttcccacc-tgctgccttctcgcgcgccctgcaaaatttactaaaataaccctggttcggattacataatccggaccagattgttag 31271144  T
Q  166 ttattttcggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaag 232  Q
    | |||| || |||||||||| ||||||||||||| |||  |||||||||||||||||||||||||||    
T  31271145 tgatttccgaaaacagaaatccggaccagatgttatgtgtttttctgtgtctttctttgatgtcaag 31271211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 68 - 234
Target Start/End: Complemental strand, 31723308 - 31723145
Alignment:
Q  68 gactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagtt 167  Q
    ||||||||||||| ||||| |||| ||| ||||| |  ||||||||||||||||||||||||||||| || ||||||||||| ||| |||||||| |||     
T  31723308 gactattactttttccaccatgctcccttctcgcccatcctacaaaatttactaaaatacccctggttcggattacataatccggatcagattgtcagtg 31723209  T
Q  168 attttcggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaaggg 234  Q
    ||||||||||||| ||||||||||   | ||| ||||||||| |||||| |||||||||||||||||    
T  31723208 attttcggaaacataaattcggac---aagttatgtaattttatgtgtcattctttgatgtcaaggg 31723145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 68 - 231
Target Start/End: Original strand, 303452 - 303615
Alignment:
Q  68 gactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagtt 167  Q
    ||||||||||||||||||||||||  ||||||||||  ||| |||||||||||||||||||||||||||| ||||  ||||| |||||||||||| || |    
T  303452 gactattacttttcccaccctgctgtctcctcgcgcatcctgcaaaatttactaaaatacccctggtccggattatgtaatccggaccagattgttag-t 303550  T
Q  168 attttcggaaacagaaattcggaccagatgtt-gtgtaattttctgtgtctttctttgatgtcaa 231  Q
     ||| ||||||||||||| ||||  |||||||  ||||||||| ||||||||||||| |||||||    
T  303551 gtttccggaaacagaaatccggattagatgttaatgtaattttatgtgtctttctttaatgtcaa 303615  T

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Target: chr6; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 65 - 234
Target Start/End: Complemental strand, 9305400 - 9305231
Alignment:
Q  65 atagactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaa 164  Q
    ||||||||||| |||| ||||| |||||||| ||||| ||||||  ||||||| | |||||||||||||| || |||| ||||||||||||||||||| |    
T  9305400 atagactattattttttccaccatgctaccttctcgcacgccctgtaaaatttccaaaaatacccctggttcggattatataatctggaccagattgtta 9305301  T
Q  165 gttattttcggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaaggg 234  Q
    || ||   ||||||   |||| |||| |||||||| |||  |||| ||||||||||||||||||||||||    
T  9305300 gtgataaccggaaaattaaatacggatcagatgttatgtgcttttttgtgtctttctttgatgtcaaggg 9305231  T

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Target: chr6; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 68 - 223
Target Start/End: Original strand, 438743 - 438898
Alignment:
Q  68 gactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagtt 167  Q
    ||||||||||||||||||| |||| ||| ||||||| ||||  |||||||||||||||  || |||| || ||||||||| || || |||||||| |||     
T  438743 gactattacttttcccaccatgctgccttctcgcgcaccctgaaaaatttactaaaatgtccttggttcggattacataaactagatcagattgttagtg 438842  T
Q  168 attttcggaaacagaaattcggaccagatgttgtgtaattttctgtgtctttcttt 223  Q
    ||||  ||||||||||||  |||||||||||| | ||||||| |||||||||||||    
T  438843 atttatggaaacagaaatctggaccagatgttatctaattttttgtgtctttcttt 438898  T

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Target: chr6; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 68 - 178
Target Start/End: Original strand, 31318227 - 31318337
Alignment:
Q  68 gactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgtaagtt 167  Q
    ||||||| ||||||||||| |||| ||| |||||| ||||| |||||||| | ||||||||| ||||||| ||||| ||||| |||||||||||| |||     
T  31318227 gactatttcttttcccaccatgctgccttctcgcgtgccctgcaaaatttccgaaaatacccatggtccggattacgtaatccggaccagattgttagtg 31318326  T
Q  168 attttcggaaa 178  Q
    ||||| |||||    
T  31318327 atttttggaaa 31318337  T

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Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 66 - 162
Target Start/End: Original strand, 29435798 - 29435894
Alignment:
Q  66 tagactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattgt 162  Q
    |||| ||||||||||| ||||||| | ||| ||||||||| || ||||| || |  ||||||||||| |||| ||||| ||||||||||||||||||    
T  29435798 tagaatattacttttctcaccctgttgccttctcgcgcgctctgcaaaaatttcataaatacccctgatccggattacgtaatctggaccagattgt 29435894  T

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Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 62 - 162
Target Start/End: Original strand, 34949228 - 34949328
Alignment:
Q  62 gtgatagactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggaccagattg 161  Q
    ||||| || ||||||||||||||||||| | ||| |||||| ||||| ||||| || |  |||||||||||||||| ||||| ||||| | |||||||||    
T  34949228 gtgattgaatattacttttcccaccctgttgccttctcgcgtgccctgcaaaagttccataaatacccctggtccggattacgtaatccgaaccagattg 34949327  T
Q  162 t 162  Q
    |    
T  34949328 t 34949328  T

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Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 169 - 213
Target Start/End: Original strand, 16395116 - 16395160
Alignment:
Q  169 ttttcggaaacagaaattcggaccagatgttgtgtaattttctgt 213  Q
    |||| |||||||||||||||||||||||||| |||||||||||||    
T  16395116 tttttggaaacagaaattcggaccagatgttttgtaattttctgt 16395160  T

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Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 156
Target Start/End: Original strand, 480019 - 480108
Alignment:
Q  66 tagactattacttttcccaccctgctacctcctcgcgcgccctacaaaatttactaaaatacccctggtccgaattacataatctggacca 156  Q
    |||||||||| |||||||||| || | ||| |||||||||| | ||||| || |  |||||||||| ||||| ||||||||||| ||||||    
T  480019 tagactattatttttcccaccatgttgccttctcgcgcgcc-tgcaaaaattccataaatacccctagtccggattacataatccggacca 480108  T

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Target: scaffold1301 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold1301
Description:

Target: scaffold1301; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 234
Target Start/End: Original strand, 1472 - 1525
Alignment:
Q  181 gaaattcggaccagatgttgtgtaattttctgtgtctttctttgatgtcaaggg 234  Q
    ||||| ||||||| ||||| ||  ||||||||||||||||||||||||||||||    
T  1472 gaaatccggaccatatgttatgcgattttctgtgtctttctttgatgtcaaggg 1525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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