View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_high_246 (Length: 226)
Name: NF20384_high_246
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_high_246 |
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| [»] scaffold1733 (1 HSPs) |
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| [»] scaffold0098 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 25961514 - 25961305
Alignment:
| Q |
1 |
accttgataagttaggtttgtttgtggtttcagctttatagattgtgaatgaaatactaactttgtttttcctcatgttaggatggggaagtggaagatg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25961514 |
accttgataagttaggtttgtttgtggtttcagctttatgtatagattgtgaaatactaactttgtttttcctcatgttaggatggggaagtggaagatg |
25961415 |
T |
|
| Q |
101 |
acaagttttggttcttcaagtgggaatcaatatcactctccaaatccatcatttggcagaaatttgactcaggatcaactaggaggtgttgtatttggga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25961414 |
acaagttttggttcttcaagtgggaatcaatatcactctccaaatccatcatttggcagaaatttgactcaggatcaactaggaggtgttgtatttggga |
25961315 |
T |
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| Q |
201 |
ccaagaactg |
210 |
Q |
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|||||||||| |
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| T |
25961314 |
ccaagaactg |
25961305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1733 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold1733
Description:
Target: scaffold1733; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 50 - 169
Target Start/End: Original strand, 11 - 136
Alignment:
| Q |
50 |
tgaaatactaactttgtttttcctcatgttaggatggggaagtggaagatgacaagttttggttcttcaagtgggaatcaatatcactc------tccaa |
143 |
Q |
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|||||| |||||| | || || || ||||||||||| || | ||||||| ||||| |||||||||||||||||||||||||||| |||| ||||| |
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| T |
11 |
tgaaatgctaactattttgtttcttatgttaggatgaggcattggaagaagacaaattttggttcttcaagtgggaatcaatattactctactagtccaa |
110 |
T |
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| Q |
144 |
atccatcatttggcagaaatttgact |
169 |
Q |
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| T |
111 |
gtccatcatttggtagaaatttgact |
136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0098 (Bit Score: 47; Significance: 5e-18; HSPs: 3)
Name: scaffold0098
Description:
Target: scaffold0098; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 50 - 169
Target Start/End: Original strand, 12684 - 12809
Alignment:
| Q |
50 |
tgaaatactaactttgtttttcctcatgttaggatggggaagtggaagatgacaagttttggttcttcaagtgggaatcaatatcactc------tccaa |
143 |
Q |
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|||||| |||||| | || || || ||||||||||| || | ||||||| ||||| |||||||||||||||||||||||||||| |||| ||||| |
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| T |
12684 |
tgaaatgctaactattttgtttcttatgttaggatgaggcattggaagaagacaaattttggttcttcaagtgggaatcaatattactctactagtccaa |
12783 |
T |
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| Q |
144 |
atccatcatttggcagaaatttgact |
169 |
Q |
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| T |
12784 |
gtccatcatttggtagaaatttgact |
12809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0098; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 50 - 139
Target Start/End: Original strand, 10102 - 10191
Alignment:
| Q |
50 |
tgaaatactaactttgtttttcctcatgttaggatggggaagtggaagatgacaagttttggttcttcaagtgggaatcaatatcactct |
139 |
Q |
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| T |
10102 |
tgaaatgctaactattttgtttcttatgttaggatgaggcattggaagaagacaaattttggttcttcaagtgggaatcaatattactct |
10191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0098; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 50 - 182
Target Start/End: Original strand, 6760 - 6898
Alignment:
| Q |
50 |
tgaaatactaactttgtttttcctcatgttaggatggggaagtggaagatgacaagttttggttcttcaagtgggaatcaatatcactc------tccaa |
143 |
Q |
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||||||||||||| | || | || ||||||||||| || | ||||||| || || |||||||||||||||||||||||||||| |||| || || |
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| T |
6760 |
tgaaatactaactattttgtatcttatgttaggatgaggcattggaagaagataaattttggttcttcaagtgggaatcaatattactccactagtcgaa |
6859 |
T |
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| Q |
144 |
atccatcatttggcagaaatttgactcaggatcaactag |
182 |
Q |
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|||||||||||| |||||||||||| | || ||||||| |
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| T |
6860 |
gtccatcatttggtagaaatttgactaaagaacaactag |
6898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 50 - 168
Target Start/End: Original strand, 17853497 - 17853621
Alignment:
| Q |
50 |
tgaaatactaactttgtttttcctcatgttaggatggggaagtggaagatgacaagttttggttcttcaagtgggaatcaatatcact------ctccaa |
143 |
Q |
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||||||||||||| | || || || ||| ||||||| || | ||||||| ||||| |||||||||||||||||||||||||||| ||| ||||| |
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| T |
17853497 |
tgaaatactaactatattgtttctaatgctaggatgaggcattggaagaagacaaattttggttcttcaagtgggaatcaatattactttgctagtccaa |
17853596 |
T |
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| Q |
144 |
atccatcatttggcagaaatttgac |
168 |
Q |
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|||||||||||| ||||||||||| |
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| T |
17853597 |
gtccatcatttggtagaaatttgac |
17853621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 169
Target Start/End: Original strand, 17855933 - 17856029
Alignment:
| Q |
79 |
taggatggggaagtggaagatgacaagttttggttcttcaagtgggaatcaatatcactc------tccaaatccatcatttggcagaaatttgact |
169 |
Q |
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||||||| || | ||||||| ||||| |||||||||||||| ||||||||||||| |||| ||||| | |||||||||| |||||||||||| |
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| T |
17855933 |
taggatgaggcattggaagaagacaaattttggttcttcaactgggaatcaatattactctgctagtccaagttcatcatttggtagaaatttgact |
17856029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 169
Target Start/End: Complemental strand, 17950623 - 17950543
Alignment:
| Q |
95 |
aagatgacaagttttggttcttcaagtgggaatcaatatcactc------tccaaatccatcatttggcagaaatttgact |
169 |
Q |
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|||| ||||| |||||| ||||||||||||||||||||| |||| || || |||||||||||| |||||||||||| |
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| T |
17950623 |
aagaagacaaattttggatcttcaagtgggaatcaatattactctactagtcgaagtccatcatttggtagaaatttgact |
17950543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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