View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_high_247 (Length: 225)
Name: NF20384_high_247
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_high_247 |
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Alignment Details
Target: chr6 (Bit Score: 116; Significance: 4e-59; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 31 - 207
Target Start/End: Complemental strand, 28151391 - 28151215
Alignment:
| Q |
31 |
tggatagtcagaaggtaannnnnnngtctacaagatgatgaagatgaaatcattaccctttccttcaaagagttagccaacttaaatgatgtatggtaac |
130 |
Q |
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| T |
28151391 |
tggatagtcagaaggtaatttttttgtctacaagacgatgaagatgaaatcattaccctttccttcaaagagttagccaacttaaatgatgtaaggccac |
28151292 |
T |
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| Q |
131 |
aatttggtaacttgcatatggaaagattctttggtagaaaatcagatggtatttcatgtaaaggaaatgcatgccat |
207 |
Q |
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| T |
28151291 |
tgtttggtaacttgcataaggaaatattctttggaagaaaatcagattgtatttcatgtaaaggaaatgcatgccat |
28151215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 70 - 207
Target Start/End: Original strand, 26341528 - 26341665
Alignment:
| Q |
70 |
gaagatgaaatcattaccctttccttcaaagagttagccaacttaaatgatgtatggtaacaatttggtaacttgcatatggaaagattctttggtagaa |
169 |
Q |
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| T |
26341528 |
gaagatgaaatcattaccttcgccttcaaagagttagccaacttaaatgatgtaaggccactgttaggtaacttgcatattgaaagattctttggaagaa |
26341627 |
T |
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| Q |
170 |
aatcagatggtatttcatgtaaaggaaatgcatgccat |
207 |
Q |
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| T |
26341628 |
aatcagatggtatttcctgtaaaggaaatgcatgccat |
26341665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 100 - 182
Target Start/End: Original strand, 28096509 - 28096591
Alignment:
| Q |
100 |
gagttagccaacttaaatgatgtatggtaacaatttggtaacttgcatatggaaagattctttggtagaaaatcagatggtat |
182 |
Q |
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| T |
28096509 |
gagttatccaccttaaatgacgtagggcaacttttgcgtaacttgcatatggaaagattctttggaagaaattcagatggtat |
28096591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 74 - 182
Target Start/End: Complemental strand, 3281817 - 3281709
Alignment:
| Q |
74 |
atgaaatcattaccctttccttcaaagagttagccaacttaaatgatgtatggtaacaatttggtaacttgcatatggaaagattctttggtagaaaatc |
173 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| || || || ||||||||||||||||||||||| ||||| |||||||| |
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| T |
3281817 |
atgaaatcattaccctttccttcaaagagttagccaacttaaatgatgtaaggctactgttgggtaacttgcatatggaaagattgtttggaagaaaatc |
3281718 |
T |
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| Q |
174 |
agatggtat |
182 |
Q |
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||||||||| |
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| T |
3281717 |
agatggtat |
3281709 |
T |
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