View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_high_249 (Length: 221)
Name: NF20384_high_249
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_high_249 |
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Alignment Details
Target: chr8 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 16 - 207
Target Start/End: Original strand, 40435873 - 40436059
Alignment:
| Q |
16 |
aagaaacaatgcctccattttgaagaatcttgccattattaacaagacattcatttttattgaggcgtttgaaaattgttggcttgataaaatgtgcaga |
115 |
Q |
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| T |
40435873 |
aagaaacaatgcctccattttgaagaatcttgccattattaacaagacattcatttttattgaggcgtttgaaaattgttggtttgataaaatgtgcaga |
40435972 |
T |
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| Q |
116 |
gcttaaaccaccacaagcaacatgaatgttatgttagagattttgcatcctctcacacatgtatttgctatctcaactatgtatgttgtaat |
207 |
Q |
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| T |
40435973 |
gcttaaaccaccacaagcaacatga-----atgttagagattttgcatcctctcacacatgtatttgctatctcaactatgtatgttgtaat |
40436059 |
T |
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Target: chr4 (Bit Score: 61; Significance: 2e-26; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 35 - 115
Target Start/End: Original strand, 14473274 - 14473354
Alignment:
| Q |
35 |
ttgaagaatcttgccattattaacaagacattcatttttattgaggcgtttgaaaattgttggcttgataaaatgtgcaga |
115 |
Q |
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| T |
14473274 |
ttgaagagtcttgccattattaacaagacaatccttattattgaggcgtttgaaaattgttgggttgataaaatgtgcaga |
14473354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 106
Target Start/End: Original strand, 40912682 - 40912753
Alignment:
| Q |
35 |
ttgaagaatcttgccattattaacaagacattcatttttattgaggcgtttgaaaattgttggcttgataaa |
106 |
Q |
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| T |
40912682 |
ttgaagagtattgccattattcacatgaaaatcattattattgaggtgtttgaaaattgttgggttgataaa |
40912753 |
T |
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