View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20384_high_25 (Length: 565)

Name: NF20384_high_25
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20384_high_25
NF20384_high_25
[»] chr4 (4 HSPs)
chr4 (18-553)||(30961190-30961725)
chr4 (18-149)||(33805975-33806106)
chr4 (18-130)||(11240198-11240310)
chr4 (23-118)||(44567139-44567234)
[»] chr1 (2 HSPs)
chr1 (23-137)||(721551-721665)
chr1 (27-144)||(38880768-38880884)
[»] chr5 (5 HSPs)
chr5 (192-401)||(38784324-38784538)
chr5 (192-334)||(38741988-38742132)
chr5 (23-143)||(16781532-16781650)
chr5 (18-144)||(42689812-42689938)
chr5 (292-510)||(38790437-38790667)
[»] chr8 (1 HSPs)
chr8 (18-149)||(45210844-45210975)
[»] chr3 (4 HSPs)
chr3 (18-144)||(37145661-37145787)
chr3 (23-143)||(17716382-17716502)
chr3 (23-143)||(19017611-19017731)
chr3 (23-140)||(53606327-53606444)
[»] chr7 (3 HSPs)
chr7 (23-136)||(48953549-48953662)
chr7 (297-349)||(34081577-34081629)
chr7 (23-140)||(46831430-46831547)
[»] chr6 (1 HSPs)
chr6 (23-143)||(8684715-8684835)


Alignment Details
Target: chr4 (Bit Score: 512; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 18 - 553
Target Start/End: Original strand, 30961190 - 30961725
Alignment:
Q  18 gttctcctctcttaaggtgtgatgaagagagatgttccaaacaattagcaagtcctttatattctggatgaggacggcgtaggtgtggtatctcggggta 117  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30961190 gttcccctctcttaaggtgtgatgaagagagatgttccgaacaattagcaagtcctttatattctggatgaggacggcgtaggtgtggtatctcggggta 30961289  T
Q  118 tcattcatgataagattaacagcaagatgtgatcccctctctttttgtagttgatcccactgtaatatggcataatttgtgaactcaaaagttgctaact 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30961290 tcattcatgataagattaacagcaagatgtgatcccctctctttttgtagttgatcccactgtaatatggcataatttgtgaactcaaaagttgctaact 30961389  T
Q  218 tcactttcctttcctcccctaacttcgtggtaactaaattttgttccacttattgctctcaatgtaagcatgtttctagatcaaccttcccttaaaaatt 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  30961390 tcactttcctttcctcccctaacttcgtggtaactaaattttgttccacttattgctctcaatgtaagcatgtttctagatcaaccttcctttaaaaatt 30961489  T
Q  318 aggaatttcaagtttctttttcttccaaagttatttttcttccctatcctttcttgattatataatttctaagtcttcctccattcctcctactactcct 417  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30961490 aggaatttcaagtttctttttcttccaaagttatttttcctccctatcctttcttgattatataatttctaagtcttcctccattcctcctactactcct 30961589  T
Q  418 atactccctaggagcctcatcctcttccttctcatagtccttttgattagaggttgatgccttcacattaccctctcttcaacaaaagtaattattcctt 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30961590 atactccctaggagcctcatcctcttccttctcatagtccttttgattagaggttgatgccttcacattaccctctcttcaacaaaagtaattattcctt 30961689  T
Q  518 tactcttcactaatcctcttaatcttcctctgtgct 553  Q
    || |||||||||||||||||||||||||| ||||||    
T  30961690 taatcttcactaatcctcttaatcttcctttgtgct 30961725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 18 - 149
Target Start/End: Complemental strand, 33806106 - 33805975
Alignment:
Q  18 gttctcctctcttaaggtgtgatgaagagagatgttccaaacaattagcaagtcctttatattctggatgaggacggcgtaggtgtggtatctcggggta 117  Q
    |||| |||||||||| |||||||| |||| ||| || | |||| | ||||| |||||||| ||||| |||||||||||||||||||| |||||||| ||     
T  33806106 gttcccctctcttaatgtgtgatggagagtgatatttcgaacattaagcaaatcctttatgttctgaatgaggacggcgtaggtgtgatatctcggagtg 33806007  T
Q  118 tcattcatgataagattaacagcaagatgtga 149  Q
    |||||||| ||||||||||| |||||| ||||    
T  33806006 tcattcataataagattaactgcaagaagtga 33805975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 11240310 - 11240198
Alignment:
Q  18 gttctcctctcttaaggtgtgatgaagagagatgttccaaacaattagcaagtcctttatattctggatgaggacggcgtaggtgtggtatctcggggta 117  Q
    |||| ||||||||||||||||||| ||||||||||||| | ||| || |||||| || ||||| || ||||| ||| ||||| ||||| |||||||||||    
T  11240310 gttcccctctcttaaggtgtgatggagagagatgttccgatcaactaacaagtctttaatattttgaatgagcacgacgtagatgtggaatctcggggta 11240211  T
Q  118 tcattcatgataa 130  Q
    |||||| ||||||    
T  11240210 tcattcttgataa 11240198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 23 - 118
Target Start/End: Complemental strand, 44567234 - 44567139
Alignment:
Q  23 cctctcttaaggtgtgatgaagagagatgttccaaacaattagcaagtcctttatattctggatgaggacggcgtaggtgtggtatctcggggtat 118  Q
    ||||||||||||||||||||||||||||||||| | ||| ||||||||| || |||||||| ||||| |||   ||| ||||| ||||||||||||    
T  44567234 cctctcttaaggtgtgatgaagagagatgttccgatcaactagcaagtctttaatattctgaatgagaacgatatagatgtggaatctcggggtat 44567139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 23 - 137
Target Start/End: Complemental strand, 721665 - 721551
Alignment:
Q  23 cctctcttaaggtgtgatgaagagagatgttccaaacaattagcaagtcctttatattctggatgaggacggcgtaggtgtggtatctcggggtatcatt 122  Q
    |||||||||| |||||||| ||||||| ||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| || |||||    
T  721665 cctctcttaatgtgtgatggagagagaagttccgaacaattagcaaatcctttatattctgaatgaggacggcgtaggtgtggtatctcggagtgtcatt 721566  T
Q  123 catgataagattaac 137  Q
    ||| |||||||||||    
T  721565 cataataagattaac 721551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 27 - 144
Target Start/End: Complemental strand, 38880884 - 38880768
Alignment:
Q  27 tcttaaggtgtgatgaagagagatgttccaaacaattagcaagtcctttatattctggatgaggacggcgtaggtgtggtatctcggggtatcattcatg 126  Q
    |||||| |||||||| ||||||||||||| |||||||||||| |||||||||||||| ||||||||| ||||||||||||||||| | || ||||||||     
T  38880884 tcttaatgtgtgatggagagagatgttccgaacaattagcaaatcctttatattctgaatgaggacgacgtaggtgtggtatctc-gagtgtcattcata 38880786  T
Q  127 ataagattaacagcaaga 144  Q
    ||||||||||| ||||||    
T  38880785 ataagattaactgcaaga 38880768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 2e-35; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 192 - 401
Target Start/End: Complemental strand, 38784538 - 38784324
Alignment:
Q  192 atttgtgaactcaaaagttgctaacttcactttcctttcctcccctaacttcgtggtaactaaat-tttgttccacttattgctctcaatgtaagcatgt 290  Q
    |||||||||||  |||||||||||||||||||||| |||||||| ||| ||| |||||||||||| ||||||||| || | ||||| ||| |||| ||||    
T  38784538 atttgtgaacttcaaagttgctaacttcactttccattcctccc-taaattcatggtaactaaatatttgttccaattttagctctgaatataagtatgt 38784440  T
Q  291 ttct--agatcaaccttcccttaaaaattaggaatttcaagtttctttttcttccaaagttatttttcttcccta----tcctttcttgattatataatt 384  Q
    ||||  ||||||||||| |||||||| |||||||||| || |||||| |||||||||||||||| ||| || |||    |||||| ||||||| ||  ||    
T  38784439 ttctctagatcaacctttccttaaaatttaggaattttaaatttcttgttcttccaaagttattcttcctctctaatcctcctttgttgattacat-gtt 38784341  T
Q  385 tctaagtcttcctccat 401  Q
    |||||||||||||||||    
T  38784340 tctaagtcttcctccat 38784324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 192 - 334
Target Start/End: Original strand, 38741988 - 38742132
Alignment:
Q  192 atttgtgaactcaaaagttgctaacttcactttcctttcctcccctaacttcgtggtaactaaat-tttgttccacttattgctctcaatgtaagcatgt 290  Q
    |||||||||||  |||||||||||||||||||||| ||| |||| ||||||| |||||||||||| |||||||||||| | ||||| ||| |||| ||||    
T  38741988 atttgtgaacttcaaagttgctaacttcactttccattcttccc-taacttcatggtaactaaatatttgttccacttttagctctgaatttaagtatgt 38742086  T
Q  291 ttct--agatcaaccttcccttaaaaattaggaatttcaagtttct 334  Q
    ||||  | |||||| ||||||||||||||| |||||||||||||||    
T  38742087 ttctctaaatcaacattcccttaaaaattaagaatttcaagtttct 38742132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 23 - 143
Target Start/End: Complemental strand, 16781650 - 16781532
Alignment:
Q  23 cctctcttaaggtgtgatgaagagagatgttccaaacaattagcaagtcctttatattctggatgaggacggcgtaggtgtggtatctcggggtatcatt 122  Q
    ||||||||||||||||||||||||||||||||| | ||| ||||||||| || |||||| | ||||| ||||||||| ||||| ||||| || |||||||    
T  16781650 cctctcttaaggtgtgatgaagagagatgttccgatcaactagcaagtctttaatattc-gaatgagaacggcgtagatgtggaatctc-ggatatcatt 16781553  T
Q  123 catgataagattaacagcaag 143  Q
    |||||||||||||||||||||    
T  16781552 catgataagattaacagcaag 16781532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 18 - 144
Target Start/End: Original strand, 42689812 - 42689938
Alignment:
Q  18 gttctcctctcttaaggtgtgatgaagagagatgttccaaacaattagcaagtcctttatattctggatgaggacggcgtaggtgtggtatctcggggta 117  Q
    |||| |||||||||| |||||||| |||||||| || | |||| | ||||| |||||||| ||||| |||||||||||||||||||| |||||||| ||     
T  42689812 gttcccctctcttaatgtgtgatggagagagatatttcgaacactaagcaaatcctttatgttctgaatgaggacggcgtaggtgtgatatctcggagtg 42689911  T
Q  118 tcattcatgataagattaacagcaaga 144  Q
    |||||||| ||||||||||| ||||||    
T  42689912 tcattcataataagattaactgcaaga 42689938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 292 - 510
Target Start/End: Complemental strand, 38790667 - 38790437
Alignment:
Q  292 tctagatcaaccttcccttaaaaattaggaatttcaagtttctttttcttccaaagttatttttcttccct-------------atcctttcttgattat 378  Q
    |||| |||||||||||||||||| | |||||||| |||||||||||||||||||||||||| ||| |||||             |||||||||||||||     
T  38790667 tctatatcaaccttcccttaaaagtaaggaattt-aagtttctttttcttccaaagttattcttcctccctagagaccctaatcatcctttcttgattac 38790569  T
Q  379 ataatttctaagtcttcctccattcctcctactactcctatactccctaggagcctcatcctcttccttctc--atagtccttttga-ttagaggttgat 475  Q
    ||  ||| |||||||| ||| ||  ||||||   |||  ||||||||| |||| |||||| ||||||| |||  ||||||||||||| || |||||||||    
T  38790568 at-gtttttaagtctttctcaatgtctcctatgcctc--atactcccttggagtctcatcatcttcctcctcatatagtccttttgacttggaggttgat 38790472  T
Q  476 gccttcacattaccctctcttcaacaaaagtaatt 510  Q
    | |||||||||||||| |||| ||| |||||||||    
T  38790471 gacttcacattaccctttctttaaccaaagtaatt 38790437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 18 - 149
Target Start/End: Original strand, 45210844 - 45210975
Alignment:
Q  18 gttctcctctcttaaggtgtgatgaagagagatgttccaaacaattagcaagtcctttatattctggatgaggacggcgtaggtgtggtatctcggggta 117  Q
    |||| |||||||||| |||||||| |||| ||| || | |||| | ||||| |||||||| ||||| |||||||||||||||||||| |||||||| ||     
T  45210844 gttcccctctcttaatgtgtgatggagagtgatatttcgaacactaagcaaatcctttatgttctgaatgaggacggcgtaggtgtgatatctcggagtg 45210943  T
Q  118 tcattcatgataagattaacagcaagatgtga 149  Q
    |||||||| ||||||||||| |||||| ||||    
T  45210944 tcattcataataagattaactgcaagaagtga 45210975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 1e-24; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 18 - 144
Target Start/End: Complemental strand, 37145787 - 37145661
Alignment:
Q  18 gttctcctctcttaaggtgtgatgaagagagatgttccaaacaattagcaagtcctttatattctggatgaggacggcgtaggtgtggtatctcggggta 117  Q
    |||| |||||||||| |||||||| |||| ||| || | |||| | ||||| |||||||| ||||| |||||||||||||||||||| |||||||| ||     
T  37145787 gttcccctctcttaatgtgtgatggagagtgatatttcgaacactaagcaaatcctttatgttctgaatgaggacggcgtaggtgtgatatctcggagtg 37145688  T
Q  118 tcattcatgataagattaacagcaaga 144  Q
    |||||||| ||||||||||| ||||||    
T  37145687 tcattcataataagattaactgcaaga 37145661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 23 - 143
Target Start/End: Original strand, 17716382 - 17716502
Alignment:
Q  23 cctctcttaaggtgtgatgaagagagatgttccaaacaattagcaagtcctttatattctggatgaggacggcgtaggtgtggtatctcggggtatcatt 122  Q
    ||||||||||||||||||||||||||||||||| | | | |||||| || || || || || || || ||||| ||| ||||| ||||||| ||||||||    
T  17716382 cctctcttaaggtgtgatgaagagagatgttccgatcgactagcaaatctttaatgttttgaataagaacggcatagatgtggaatctcggtgtatcatt 17716481  T
Q  123 catgataagattaacagcaag 143  Q
    |||||| ||||||||||||||    
T  17716482 catgatgagattaacagcaag 17716502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 23 - 143
Target Start/End: Original strand, 19017611 - 19017731
Alignment:
Q  23 cctctcttaaggtgtgatgaagagagatgttccaaacaattagcaagtcctttatattctggatgaggacggcgtaggtgtggtatctcggggtatcatt 122  Q
    ||||||||||||||||||||||||||||||||| | | | |||||| || || || || || || || ||||| ||| ||||| ||||||| ||||||||    
T  19017611 cctctcttaaggtgtgatgaagagagatgttccgatcgactagcaaatctttaatgttttgaataagaacggcatagatgtggaatctcggtgtatcatt 19017710  T
Q  123 catgataagattaacagcaag 143  Q
    |||||| ||||||||||||||    
T  19017711 catgatgagattaacagcaag 19017731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 140
Target Start/End: Original strand, 53606327 - 53606444
Alignment:
Q  23 cctctcttaaggtgtgatgaagagagatgttccaaacaattagcaagtcctttatattctggatgaggacggcgtaggtgtggtatctcggggtatcatt 122  Q
    |||||||||| ||||| || || || |||||||   || |||||| ||| || ||||||||||| ||  |||||||| |||||||||| || || |||||    
T  53606327 cctctcttaaagtgtggtggagggaaatgttcctgtcatttagcaggtctttgatattctggataagagcggcgtagatgtggtatctaggagtgtcatt 53606426  T
Q  123 catgataagattaacagc 140  Q
    |   ||||||||||||||    
T  53606427 cgcaataagattaacagc 53606444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 23 - 136
Target Start/End: Complemental strand, 48953662 - 48953549
Alignment:
Q  23 cctctcttaaggtgtgatgaagagagatgttccaaacaattagcaagtcctttatattctggatgaggacggcgtaggtgtggtatctcggggtatcatt 122  Q
    |||||||||  ||||||||||||||||||||||    |  |||||| ||||| ||||| ||||| || || |||||| |||| |||||||||||||||||    
T  48953662 cctctcttagagtgtgatgaagagagatgttccggttagctagcaaatccttgatattgtggataagaactgcgtagatgtgatatctcggggtatcatt 48953563  T
Q  123 catgataagattaa 136  Q
    ||||||||||||||    
T  48953562 catgataagattaa 48953549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 297 - 349
Target Start/End: Complemental strand, 34081629 - 34081577
Alignment:
Q  297 atcaaccttcccttaaaaattaggaatttcaagtttctttttcttccaaagtt 349  Q
    ||||||||||| ||  ||||||||||||| |||||||||||||||||||||||    
T  34081629 atcaaccttcctttggaaattaggaattttaagtttctttttcttccaaagtt 34081577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 140
Target Start/End: Complemental strand, 46831547 - 46831430
Alignment:
Q  23 cctctcttaaggtgtgatgaagagagatgttccaaacaattagcaagtcctttatattctggatgaggacggcgtaggtgtggtatctcggggtatcatt 122  Q
    |||||||||| ||||| || || || |||||||   || |||||| ||| || ||||||||||| ||  |||||||| |||||||||| || || |||||    
T  46831547 cctctcttaaagtgtggtggagggaaatgttcctgtcatttagcaggtctttgatattctggataagagcggcgtagatgtggtatctaggagtgtcatt 46831448  T
Q  123 catgataagattaacagc 140  Q
    |   ||||||||||||||    
T  46831447 cgcaataagattaacagc 46831430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 23 - 143
Target Start/End: Complemental strand, 8684835 - 8684715
Alignment:
Q  23 cctctcttaaggtgtgatgaagagagatgttccaaacaattagcaagtcctttatattctggatgaggacggcgtaggtgtggtatctcggggtatcatt 122  Q
    |||||||||||||||||||||||||||  |||| | | | |||||| || || || || || || || || |||||| ||||| ||||||| ||||||||    
T  8684835 cctctcttaaggtgtgatgaagagagaaattccgatcgactagcaaatctttaatgttttgaataagaacagcgtagatgtggaatctcggtgtatcatt 8684736  T
Q  123 catgataagattaacagcaag 143  Q
    |||||| ||||||||||||||    
T  8684735 catgatgagattaacagcaag 8684715  T

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