View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_high_251 (Length: 218)
Name: NF20384_high_251
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_high_251 |
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Alignment Details
Target: chr5 (Bit Score: 97; Significance: 8e-48; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 17 - 113
Target Start/End: Original strand, 9426162 - 9426258
Alignment:
| Q |
17 |
cacagatttattattattttttactatccttttctgacatcattatgtttggaagagtttctcacattacacaccatttttgtatatggtctattcc |
113 |
Q |
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| T |
9426162 |
cacagatttattattattttttactatccttttctgacatcattatgtttggaagagtttctcacattacacaccatttttgtatatggtctattcc |
9426258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 17 - 113
Target Start/End: Complemental strand, 13598513 - 13598417
Alignment:
| Q |
17 |
cacagatttattattattttttactatccttttctgacatcattatgtttggaagagtttctcacattacacaccatttttgtatatggtctattcc |
113 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13598513 |
cacatatttattattattttttactatccttttctgacatcattatgtttggaagagtttctcacattacacaccatttttgtatatggtctattcc |
13598417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 200
Target Start/End: Original strand, 9426307 - 9426339
Alignment:
| Q |
168 |
gaattcactacagaattgtgcactatagtatat |
200 |
Q |
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| T |
9426307 |
gaattcactacagaattgtacactatagtatat |
9426339 |
T |
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