View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20384_high_257 (Length: 212)
Name: NF20384_high_257
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_high_257 |
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Alignment Details
Target: chr7 (Bit Score: 183; Significance: 4e-99; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 11 - 193
Target Start/End: Original strand, 7878572 - 7878754
Alignment:
| Q |
11 |
gcaaaggaagaaacaagtggtaacaagaaagaaattacaattacgaatgaaaatggaagactatcaagggaagaaattgagagaaagattaaagaagctg |
110 |
Q |
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| T |
7878572 |
gcaaaggaagaaacaagtggtaacaagaaagaaattacaattacgaatgaaaatggaagactatcaagggaagaaattgagagaaagattaaagaagctg |
7878671 |
T |
|
| Q |
111 |
agtacttcaagtctgaagacatgaagtttatggagaaggttagagcagtgaatgctttggaggattacatttatagaatgagg |
193 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7878672 |
agtacttcaagtctgaagacatgaagtttatggagaaggttagagcagtgaatgctttggaggattacatttatagaatgagg |
7878754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 15 - 177
Target Start/End: Complemental strand, 8589963 - 8589801
Alignment:
| Q |
15 |
aggaagaaacaagtggtaacaagaaagaaattacaattacgaatgaaaatggaagactatcaagggaagaaattgagagaaagattaaagaagctgagta |
114 |
Q |
| |
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||||||||| |||||||| || ||| | |||||||| || ||||||||||||||||| |||| |||||||||||||||| ||| | ||||||||| | |
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| T |
8589963 |
aggaagaaagcagtggtaataaaaaaaatattacaataaccaatgaaaatggaagactgacaagcgaagaaattgagagaatgatccaggaagctgagca |
8589864 |
T |
|
| Q |
115 |
cttcaagtctgaagacatgaagtttatggagaaggttagagcagtgaatgctttggaggatta |
177 |
Q |
| |
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||||||| |||||||||||||| | || |||| ||||||||| |||||||||| || ||||| |
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| T |
8589863 |
cttcaaggctgaagacatgaagcatgtgaagaaagttagagcaatgaatgctttagatgatta |
8589801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 39 - 177
Target Start/End: Original strand, 8383746 - 8383884
Alignment:
| Q |
39 |
aagaaattacaattacgaatgaaaatggaagactatcaagggaagaaattgagagaaagattaaagaagctgagtacttcaagtctgaagacatgaagtt |
138 |
Q |
| |
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|||| |||||||| | ||||||||||||||| |||||| || ||||||||||||| ||| |||| || ||| | |||||| |||||||||||||||| |
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| T |
8383746 |
aagatattacaataaagaatgaaaatggaagtttatcaactgatgaaattgagagaatgatccaagaggcagagaatttcaaggctgaagacatgaagtt |
8383845 |
T |
|
| Q |
139 |
tatggagaaggttagagcagtgaatgctttggaggatta |
177 |
Q |
| |
|
|||| |||| |||| |||| ||||||||||||| ||||| |
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| T |
8383846 |
tatgaagaaagttaaagcaatgaatgctttggacgatta |
8383884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 39 - 177
Target Start/End: Complemental strand, 8601272 - 8601134
Alignment:
| Q |
39 |
aagaaattacaattacgaatgaaaatggaagactatcaagggaagaaattgagagaaagattaaagaagctgagtacttcaagtctgaagacatgaagtt |
138 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||| ||| ||||||||||| | ||||| ||||||||||||||| |
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| T |
8601272 |
aagaaattacaataacgaatgaaaagggaagactatcaaccgaagaaattgagagaatgatccaagaagctgagaatttcaaagatgaagacatgaagtt |
8601173 |
T |
|
| Q |
139 |
tatggagaaggttagagcagtgaatgctttggaggatta |
177 |
Q |
| |
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| | |||| |||| |||| |||||| | |||| ||||| |
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| T |
8601172 |
caagaagaaagttaaagcaatgaatgatctggatgatta |
8601134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 17 - 138
Target Start/End: Complemental strand, 8544956 - 8544835
Alignment:
| Q |
17 |
gaagaaacaagtggtaacaagaaagaaattacaattacgaatgaaaatggaagactatcaagggaagaaattgagagaaagattaaagaagctgagtact |
116 |
Q |
| |
|
|||||||| ||||||| ||||| ||||||||||| || | ||||||||||||| |||||||||||||||||||||||| ||| | |||||||| | | |
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| T |
8544956 |
gaagaaaccagtggtagtaagaatgaaattacaataactattgaaaatggaagattatcaagggaagaaattgagagaatgatccaggaagctgacaatt |
8544857 |
T |
|
| Q |
117 |
tcaagtctgaagacatgaagtt |
138 |
Q |
| |
|
||||| || ||||||||||||| |
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|
| T |
8544856 |
tcaaggctcaagacatgaagtt |
8544835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 15 - 183
Target Start/End: Complemental strand, 8609242 - 8609074
Alignment:
| Q |
15 |
aggaagaaacaagtggtaacaagaaagaaattacaattacgaatgaaaatggaagactatcaagggaagaaattgagagaaagattaaagaagctgagta |
114 |
Q |
| |
|
|||||||||| |||||||| |||||||| ||||| || || || |||||||| |||| |||| |||||||||||||||| |||| ||||||||||| | |
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|
| T |
8609242 |
aggaagaaaccagtggtaataagaaagatattactataacaaaggaaaatggtcgactttcaactgaagaaattgagagaatgattcaagaagctgagaa |
8609143 |
T |
|
| Q |
115 |
cttcaagtctgaagacatgaagtttatggagaaggttagagcagtgaatgctttggaggattacattta |
183 |
Q |
| |
|
||||| |||||| ||||||||| |||| |||| |||| |||||| |||||| |||||| |||| |
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|
| T |
8609142 |
tttcaaagaggaagacttgaagtttaaaaagaaagttaaagcaatgaatgttttggatgattaccttta |
8609074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 138
Target Start/End: Complemental strand, 8569635 - 8569513
Alignment:
| Q |
16 |
ggaagaaacaagtggtaacaagaaagaaattacaattacgaatgaaaatggaagactatcaagggaagaaattgagagaaagattaaagaagctgagtac |
115 |
Q |
| |
|
||||||||| ||||| || || || ||||||||||| || ||||| || |||||| ||||||||| | |||||||||||| ||| | ||||||||| | |
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|
| T |
8569635 |
ggaagaaaccagtggcaataaaaatgaaattacaataactaatgagaagggaagattatcaaggggacaaattgagagaatgatccaggaagctgagaat |
8569536 |
T |
|
| Q |
116 |
ttcaagtctgaagacatgaagtt |
138 |
Q |
| |
|
|||||| || ||||||||||||| |
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|
| T |
8569535 |
ttcaaggctcaagacatgaagtt |
8569513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 15 - 177
Target Start/End: Complemental strand, 8581022 - 8580860
Alignment:
| Q |
15 |
aggaagaaacaagtggtaacaagaaagaaattacaattacgaatgaaaatggaagactatcaagggaagaaattgagagaaagattaaagaagctgagta |
114 |
Q |
| |
|
|||||||||||| || || ||||| | |||||||| |||||||||||||||||||| ||||| || |||||||||| || |||| | ||||||| |
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|
| T |
8581022 |
aggaagaaacaaatgctagtaagaaggctattacaataacgaatgaaaatggaagactttcaagagaggaaattgagaaaatgattttacaagctgaaat |
8580923 |
T |
|
| Q |
115 |
cttcaagtctgaagacatgaagtttatggagaaggttagagcagtgaatgctttggaggatta |
177 |
Q |
| |
|
|| ||| || |||||||| |||| | | |||| |||| |||| | ||||||||||| ||||| |
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|
| T |
8580922 |
ttttaaggctcaagacatggagttcaagaagaaagttaaagcaataaatgctttggacgatta |
8580860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 15 - 177
Target Start/End: Original strand, 29578518 - 29578680
Alignment:
| Q |
15 |
aggaagaaacaagtggtaacaagaaagaaattacaattacgaatgaaaatggaagactatcaagggaagaaattgagagaaagattaaagaagctgagta |
114 |
Q |
| |
|
|||||||||||| ||| || |||| || || ||||| || ||||| ||| ||||||| |||| ||||||||||| ||| ||| ||||||||||| | |
|
|
| T |
29578518 |
aggaagaaacaactggaaataagagtgagatcacaataacaaatgataatagaagactttcaactcaagaaattgagcgaatgatccaagaagctgagaa |
29578617 |
T |
|
| Q |
115 |
cttcaagtctgaagacatgaagtttatggagaaggttagagcagtgaatgctttggaggatta |
177 |
Q |
| |
|
|||||| |||||| ||||||||| ||||| | |||||| || ||||||||||| ||||| |
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|
| T |
29578618 |
attcaaggttgaagatatgaagtttcaagagaaagctagagcggtaaatgctttggaagatta |
29578680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 138
Target Start/End: Original strand, 29582687 - 29582810
Alignment:
| Q |
15 |
aggaagaaacaagtggtaacaagaaagaaattacaattacgaatgaaaatggaagactatcaagggaagaaattgagagaaagattaaagaagctgagta |
114 |
Q |
| |
|
|||||||||| | ||| || || ||||| |||||||| || |||| |||||||||| | |||| |||||||||||||||| ||| ||||||| ||| | |
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|
| T |
29582687 |
aggaagaaaccactggaaataaaaaagagattacaataacaaatgtaaatggaagattgtcaactgaagaaattgagagaatgatccaagaagcagagaa |
29582786 |
T |
|
| Q |
115 |
cttcaagtctgaagacatgaagtt |
138 |
Q |
| |
|
|||||| |||||| ||||||| |
|
|
| T |
29582787 |
tttcaaggttgaagatctgaagtt |
29582810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 177
Target Start/End: Complemental strand, 8575628 - 8575462
Alignment:
| Q |
11 |
gcaaaggaagaaacaagtggtaacaagaaagaaattacaattacgaatgaaaatggaagactatcaagggaagaaattgagagaaagattaaagaagctg |
110 |
Q |
| |
|
||||||||||||||||||||| | ||||||| ||| |||| |||||| || | | |||||||| | ||||||||| ||||| |||| ||||||||| |
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|
| T |
8575628 |
gcaaaggaagaaacaagtggttataagaaaggtattgcaatgacgaatcaatactgtagactatcgactcaagaaattgcgagaatgattcaagaagctg |
8575529 |
T |
|
| Q |
111 |
agtacttcaagtctgaagacatgaagtttatggagaaggttagagcagtgaatgctttggaggatta |
177 |
Q |
| |
|
| |||||| || |||||||| |||| | | |||| |||| |||| | ||||| ||||| ||||| |
|
|
| T |
8575528 |
aaattttcaaggctcaagacatggagttcaagaagaaagttacagcaataaatgcattggacgatta |
8575462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 14 - 171
Target Start/End: Complemental strand, 12527830 - 12527673
Alignment:
| Q |
14 |
aaggaagaaacaagtggtaacaagaaagaaattacaattacgaatgaaaatggaagactatcaagggaagaaattgagagaaagattaaagaagctgagt |
113 |
Q |
| |
|
|||||| |||| |||||||| |||||||| |||||||| || ||||||||||||||| ||||||| |||||||||| ||||| ||| | ||||||||| |
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|
| T |
12527830 |
aaggaaaaaaccagtggtaataagaaagatattacaataacaaatgaaaatggaagattatcaagtgaagaaattgggagaatgatccaggaagctgaga |
12527731 |
T |
|
| Q |
114 |
acttcaagtctgaagacatgaagtttatggagaaggttagagcagtgaatgctttgga |
171 |
Q |
| |
|
| |||||| ||||||| |||||||| | |||| |||| |||| | ||||||||||| |
|
|
| T |
12527730 |
atttcaaggctgaagatatgaagttcaaaaagaaagttaaagcaatcaatgctttgga |
12527673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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