View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_high_258 (Length: 211)
Name: NF20384_high_258
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_high_258 |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 16 - 193
Target Start/End: Complemental strand, 49232198 - 49232021
Alignment:
| Q |
16 |
aaaatgcatgttatttttacgtaaaaatccctataatttatttgaaatgcatgttagctagtttaacataaaaatccataccattaggggatttgatttt |
115 |
Q |
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| T |
49232198 |
aaaatgcatgttatttttacgtaaaaatccctataatttatttgaaatgcgtgttagctagtttaacacaaaaatccataccattaggggatatgatttt |
49232099 |
T |
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| Q |
116 |
tgctcagctggtgaaaaattcccgataagccattccacatatcaccattttccagcaagctaaattatttagtccttg |
193 |
Q |
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| T |
49232098 |
tgctcagctggtgaaaaattcccgataagccattccacatatcaccattttccagcaagctaaattatttagtccttg |
49232021 |
T |
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