View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_high_262 (Length: 203)
Name: NF20384_high_262
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_high_262 |
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Alignment Details
Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 39509472 - 39509661
Alignment:
| Q |
1 |
ttctctgtgtactgcacctctctgaagctgcaaagaatattccaagtcccacaaaacatcgcccattgaaggcctatcacaaccatcatcttgtaagcac |
100 |
Q |
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| T |
39509472 |
ttctctatgtactgcacctctctgaagctgcaaagaatattccaagtcccacattacatttcccattgaaggcctatcacaaccatcatcttgtaagcat |
39509571 |
T |
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| Q |
101 |
ttttccactatctcactaaactttctaagtgagtttggatcaatttgtcccttgatggaaggatcaatgatatcttccaatagccctttg |
190 |
Q |
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| T |
39509572 |
ttttccactttctcactaaactttctaagtgagtttggatcaatttgtcccttgatggaaggatcaatgatatcttcaagtatccctttg |
39509661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 18 - 190
Target Start/End: Original strand, 39574389 - 39574561
Alignment:
| Q |
18 |
ctctctgaagctgcaaagaatattccaagtcccacaaaacatcgcccattgaaggcctatcacaaccatcatcttgtaagcacttttccactatctcact |
117 |
Q |
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| T |
39574389 |
ctctctgaagctgcaaagcatattccaagtcccacaacacatcaaccattgttggcctatcacacccataatcgtgtaagcatttttccacagtctcact |
39574488 |
T |
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| Q |
118 |
aaactttctaagtgagtttggatcaatttgtcccttgatggaaggatcaatgatatcttccaatagccctttg |
190 |
Q |
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| T |
39574489 |
aaatattcttagtgagttttgattgatttgtgccttgatggaaggatcaacgatctcttcaagtatccctttg |
39574561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 18 - 167
Target Start/End: Original strand, 39578922 - 39579071
Alignment:
| Q |
18 |
ctctctgaagctgcaaagaatattccaagtcccacaaaacatcgcccattgaaggcctatcacaaccatcatcttgtaagcacttttccactatctcact |
117 |
Q |
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| T |
39578922 |
ctctctgaagctgcaaagcatattccaagtcccacaacacatcaaccattgttggcctatcacaaccacgatcttgtaagcattttttcatggtctcact |
39579021 |
T |
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| Q |
118 |
aaactttctaagtgagtttggatcaatttgtcccttgatggaaggatcaa |
167 |
Q |
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| T |
39579022 |
aaatattctaagtgagttttgattgatttgtgccttgatagagggatcaa |
39579071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 18 - 190
Target Start/End: Original strand, 39542554 - 39542726
Alignment:
| Q |
18 |
ctctctgaagctgcaaagaatattccaagtcccacaaaacatcgcccattgaaggcctatcacaaccatcatcttgtaagcacttttccactatctcact |
117 |
Q |
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| T |
39542554 |
ctctctgcagctgcaaagcatattccaagtcccacaacacatcaaccattgttggcctgtcacaaccataatcatgtaagcatttttccacagtctcgtt |
39542653 |
T |
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| Q |
118 |
aaactttctaagtgagtttggatcaatttgtcccttgatggaaggatcaatgatatcttccaatagccctttg |
190 |
Q |
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| T |
39542654 |
aaatattcttagtgagttttgattaatttgcgccttgatggaaggatcaacgatctcttcaagtatccctttg |
39542726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 39516540 - 39516592
Alignment:
| Q |
1 |
ttctctgtgtactgcacctctctgaagctgcaaagaatattccaagtcccaca |
53 |
Q |
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| T |
39516540 |
ttctctatgtactgcacctctctgaagctgcaaagaatattccaagtcccaca |
39516592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 13973328 - 13973384
Alignment:
| Q |
23 |
tgaagctgcaaagaatattccaagtcccacaaaacatcgcccattgaaggcctatca |
79 |
Q |
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| T |
13973328 |
tgaagctgcaatgcatattccaaattccaaagaacatctcccattgaaggcctatca |
13973384 |
T |
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