View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20384_high_27 (Length: 542)

Name: NF20384_high_27
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20384_high_27
NF20384_high_27
[»] chr2 (5 HSPs)
chr2 (215-531)||(8713465-8713781)
chr2 (215-531)||(8670688-8670998)
chr2 (17-152)||(8713855-8713990)
chr2 (20-152)||(8671072-8671205)
chr2 (220-355)||(8689715-8689851)
[»] chr8 (1 HSPs)
chr8 (220-351)||(23430570-23430706)
[»] chr3 (6 HSPs)
chr3 (46-140)||(13754615-13754712)
chr3 (46-140)||(13768017-13768114)
chr3 (46-141)||(13732924-13733023)
chr3 (97-141)||(13740691-13740735)
chr3 (466-511)||(10847905-10847950)
chr3 (468-508)||(48649172-48649212)
[»] chr5 (1 HSPs)
chr5 (468-506)||(2313960-2313998)
[»] chr4 (1 HSPs)
chr4 (468-508)||(24158819-24158859)


Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 215 - 531
Target Start/End: Complemental strand, 8713781 - 8713465
Alignment:
Q  215 ggctcttgaattaaaacatttgtaatcaaatctttaaatttataagtaaattgcaattattcagtccctaaatttagatattcaattacaaattatttaa 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8713781 ggctcttgaattaaaacatttgtaatcaaatctttaaatttataagtaaattgcaattattcagtccctaaatttagatattcaattacaaattatttaa 8713682  T
Q  315 gcaaatattatcacagacaaacattatgtgctcacagtctattccaaagcgatcagttatatcataatagtagtctaacttttgtttgaaacattttatt 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  8713681 gcaaatattatcacagacaaacattatgtgctcacagtctattccaaagcgatcacttatatcataatagtagtctaacttttgtttgaaacattttatt 8713582  T
Q  415 agttcagttccatgtacacacaattatgaaacattttgtctgtgtaaccgataacacaaggtgtcaacagagtcattgacaccaaatcttaaccattcat 514  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||| ||||||||||||||  ||||||||||    
T  8713581 agttcagttccatgtacacacaattatgaaacattttgtctgcgtaaccgttaacaccaggtgtcaacagagttattgacaccaaatcccaaccattcat 8713482  T
Q  515 gagaccgttggattcat 531  Q
    |||||||||||||||||    
T  8713481 gagaccgttggattcat 8713465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 215 - 531
Target Start/End: Complemental strand, 8670998 - 8670688
Alignment:
Q  215 ggctcttgaattaaaacatttgtaatcaaatctttaaatttataagtaaattgcaattattcagtccctaaatttagatattcaattacaaattatttaa 314  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||       |||||||||||| ||    
T  8670998 ggctcttgaattaaaacatttgtaatcaactctttaaatttataaataaattgcaattattcagtccctaaatttagac------ttacaaattattgaa 8670905  T
Q  315 gcaaatattatcacagacaaacattatgtgctcacagtctattccaaagcgatcagttatatcataatagtagtctaacttttgtttgaaacattttatt 414  Q
    ||||||||||||| |||| || ||||||||||||||||||||| ||||| ||||| ||||||||||||  ||||||||||||||||||||||||||||||    
T  8670904 gcaaatattatcatagaccaagattatgtgctcacagtctattgcaaagagatcacttatatcataatcttagtctaacttttgtttgaaacattttatt 8670805  T
Q  415 agttcagttccatgtacacacaattatgaaacattttgtctgtgtaaccgataacacaaggtgtcaacagagtcattgacaccaaatcttaaccattcat 514  Q
    |||||||||||||||||| ||| |||||||||||||||| ||||||| || ||||||  |||||||||||| || |||||||||| ||  ||||||||||    
T  8670804 agttcagttccatgtacatacagttatgaaacattttgtttgtgtaatcgttaacacctggtgtcaacagattcgttgacaccaattcacaaccattcat 8670705  T
Q  515 gagaccgttggattcat 531  Q
    |||||| ||||||||||    
T  8670704 gagaccattggattcat 8670688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 17 - 152
Target Start/End: Complemental strand, 8713990 - 8713855
Alignment:
Q  17 accgaaaacaatacgaaactctagatacagaaaacaatgtaacatttatttaacaagtgataactaaaaattaaaacggaaagcatacaaataaaattct 116  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8713990 accgaaaacaatacgaaactctagatacagaaaacaatgttacatttatttaacaagtgataactaaaaattaaaacggaaagcatacaaataaaattct 8713891  T
Q  117 aaatacaatggttgtgatggtgaaaatttatataac 152  Q
    ||||||| ||||||||||||||||||||||||||||    
T  8713890 aaatacattggttgtgatggtgaaaatttatataac 8713855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 20 - 152
Target Start/End: Complemental strand, 8671205 - 8671072
Alignment:
Q  20 gaaaacaatacgaaactctagatacagaaaacaatgtaacatttatttaacaa-gtgataactaaaaattaaaacggaaagcatacaaataaaattctaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||| ||||||    
T  8671205 gaaaacaatacgaaactctagatacagaaaacaatgtaacatttatttaacaaagtgataacaaaaaattaaaacggaaagcacacaaataaatttctaa 8671106  T
Q  119 atacaatggttgtgatggtgaaaatttatataac 152  Q
    ||||||||||||||||||||||| || |||||||    
T  8671105 atacaatggttgtgatggtgaaagttgatataac 8671072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 220 - 355
Target Start/End: Complemental strand, 8689851 - 8689715
Alignment:
Q  220 ttgaattaaaacatttgtaatcaaatctttaaatttataagtaaattgcaattattcagtccctaaatttag--atattcaattacaaattatttaagca 317  Q
    ||||||||||||||||||||||||||||||||| |||||| ||||||||||||| | ||| |||||||||||  || |||||||||||| |||||| |||    
T  8689851 ttgaattaaaacatttgtaatcaaatctttaaacttataaataaattgcaattagttagt-cctaaatttaggtattttcaattacaaactatttaggca 8689753  T
Q  318 aatattatcacagacaaacattatgtgctcacagtcta 355  Q
     ||||||||| |||| |||||||||| |||||||||||    
T  8689752 gatattatcatagaccaacattatgttctcacagtcta 8689715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 220 - 351
Target Start/End: Original strand, 23430570 - 23430706
Alignment:
Q  220 ttgaattaaaacatttgtaatcaaatctttaaatttata---agtaaattgcaattattcagtccctaaatttag--atattcaattacaaattatttaa 314  Q
    ||||||||||||||||||||||||||||||||| |||||   | ||||| ||||||| | |||||||||||||||  || |||||||||||| ||||||     
T  23430570 ttgaattaaaacatttgtaatcaaatctttaaacttataaataataaatagcaattagttagtccctaaatttaggtattttcaattacaaactatttag 23430669  T
Q  315 gcaaatattatcacagacaaacattatgtgctcacag 351  Q
    ||| ||||||||| |||| |||||||||||| |||||    
T  23430670 gcagatattatcatagaccaacattatgtgcacacag 23430706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 6e-23; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 46 - 140
Target Start/End: Original strand, 13754615 - 13754712
Alignment:
Q  46 gaaaacaatgtaacatttatttaac---aagtgataactaaaaattaaaacggaaagcatacaaataaaattctaaatacaatggttgtgatggtgaa 140  Q
    |||||||||||||||||| |||||    |||||||| | |||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||    
T  13754615 gaaaacaatgtaacatttctttaattaaaagtgatagcaaaaaattaaaacggaaagcacacatataaatttctaaatacaatggttgtgatggtgaa 13754712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 46 - 140
Target Start/End: Original strand, 13768017 - 13768114
Alignment:
Q  46 gaaaacaatgtaacatttatttaac---aagtgataactaaaaattaaaacggaaagcatacaaataaaattctaaatacaatggttgtgatggtgaa 140  Q
    |||||||||||||||||| |||||    |||||||| | |||||||||||||||||||| ||  ||||| ||||||||||||||||||||||||||||    
T  13768017 gaaaacaatgtaacatttctttaattaaaagtgatagcaaaaaattaaaacggaaagcacacctataaatttctaaatacaatggttgtgatggtgaa 13768114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 46 - 141
Target Start/End: Original strand, 13732924 - 13733023
Alignment:
Q  46 gaaaacaatgtaacatttatttaaca----agtgataactaaaaattaaaacggaaagcatacaaataaaattctaaatacaatggttgtgatggtgaaa 141  Q
    |||||||||||||||||| ||||| |    ||||||||| |||||  ||||  ||||||| ||| ||||| |||||||||||| |||| |||||||||||    
T  13732924 gaaaacaatgtaacatttctttaaaataaaagtgataacaaaaaaagaaaatagaaagcacacatataaatttctaaatacaacggttatgatggtgaaa 13733023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 97 - 141
Target Start/End: Original strand, 13740691 - 13740735
Alignment:
Q  97 aagcatacaaataaaattctaaatacaatggttgtgatggtgaaa 141  Q
    ||||| ||| ||||| |||||||||||||||||||||||||||||    
T  13740691 aagcacacatataaatttctaaatacaatggttgtgatggtgaaa 13740735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 466 - 511
Target Start/End: Complemental strand, 10847950 - 10847905
Alignment:
Q  466 taacacaaggtgtcaacagagtcattgacaccaaatcttaaccatt 511  Q
    |||||| ||||||||||||| |||||||||||||||| || |||||    
T  10847950 taacaccaggtgtcaacagattcattgacaccaaatcctagccatt 10847905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 468 - 508
Target Start/End: Complemental strand, 48649212 - 48649172
Alignment:
Q  468 acacaaggtgtcaacagagtcattgacaccaaatcttaacc 508  Q
    |||| ||||||||||||| || |||||||||||||||||||    
T  48649212 acaccaggtgtcaacagattcgttgacaccaaatcttaacc 48649172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 468 - 506
Target Start/End: Original strand, 2313960 - 2313998
Alignment:
Q  468 acacaaggtgtcaacagagtcattgacaccaaatcttaa 506  Q
    |||| ||||||||||||| ||||||||||||||||||||    
T  2313960 acaccaggtgtcaacagattcattgacaccaaatcttaa 2313998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 468 - 508
Target Start/End: Complemental strand, 24158859 - 24158819
Alignment:
Q  468 acacaaggtgtcaacagagtcattgacaccaaatcttaacc 508  Q
    |||| ||||||||||||| || |||||||||||||||||||    
T  24158859 acaccaggtgtcaacagattcgttgacaccaaatcttaacc 24158819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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