View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20384_high_3 (Length: 806)

Name: NF20384_high_3
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20384_high_3
NF20384_high_3
[»] chr7 (4 HSPs)
chr7 (19-463)||(32060911-32061355)
chr7 (594-784)||(32059253-32059443)
chr7 (547-614)||(32059188-32059255)
chr7 (400-581)||(16331492-16331673)
[»] chr3 (4 HSPs)
chr3 (74-581)||(3236931-3237424)
chr3 (70-216)||(34933491-34933637)
chr3 (70-246)||(14505517-14505693)
chr3 (71-181)||(8969993-8970103)
[»] chr8 (4 HSPs)
chr8 (71-358)||(39530618-39530898)
chr8 (373-504)||(11109057-11109188)
chr8 (373-500)||(11595219-11595346)
chr8 (405-494)||(39530925-39531014)
[»] chr4 (1 HSPs)
chr4 (373-533)||(37590200-37590360)
[»] chr6 (1 HSPs)
chr6 (399-542)||(33097813-33097956)
[»] chr1 (1 HSPs)
chr1 (71-168)||(4166664-4166761)
[»] chr2 (1 HSPs)
chr2 (98-228)||(21086558-21086688)


Alignment Details
Target: chr7 (Bit Score: 429; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 19 - 463
Target Start/End: Complemental strand, 32061355 - 32060911
Alignment:
Q  19 tataactgatatattaggtgtgcgggcagtgctggaaactagcaagtatttggatagagtatggcaaaagatcaatatctggagtagtaagtgtttgtct 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  32061355 tataactgatatattaggtgtgcgggcagtgctggaaactagcaagtatttggatagagtatggcaaaagatcaatatctggagtagtaagtgtttttct 32061256  T
Q  119 aaagcgagaagggagattatgattaaattagtgctttagtcaattccatcatatgtgatgagtattttcaaattacctaatacattactagatgaaatcg 218  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32061255 aaagcgagaaaggagattatgattaaatcagtgctttagtcaattccatcatatgtgatgagtattttcaaattacctaatacattactagatgaaatcg 32061156  T
Q  219 aggagatgataaatggcttttggtgggggaatggtggtgctaataagtaataatagaggaatgcattggttgttgtgagacaaaccatcggttcacaaaa 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32061155 aggagatgataaatggcttttggtgggggaatggtggtgctaataagtaataatagaggaatgcattggttgttgtgagacaaaccatcggttcacaaaa 32061056  T
Q  319 ggcatggtggaatgggatttaaggatcttgcgggatttaatgatttaactatgcatgcttgggaaacaaggatggaagcttcaaactgaaccggatactc 418  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  32061055 ggcatggtggaatgggatttaaggatcttgcgggatttaatgatttaactgtgcatgcttgggaaacaaggatggaagcttcaaactgaaccggatactc 32060956  T
Q  419 tagttgctaaggtgtttaaggcaaggtattatcctcatagtaatt 463  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  32060955 tagttgctaaggtgtttaaggcaaggtattatcctcatagtaatt 32060911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 175; E-Value: 9e-94
Query Start/End: Original strand, 594 - 784
Target Start/End: Original strand, 32059253 - 32059443
Alignment:
Q  594 ttggttgggtgctagctctagtacacctcccgtgagtccggcagctttggctttacaaagatattttgtgggtcacttgattcactaagacacaaaaaca 693  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32059253 ttggttgggtgctagctctagtacgcctcccgtgagtccggcagctttggctttacaaagatattttgtgggtcacttgattcactaagacacaaaaaca 32059352  T
Q  694 tggaacaaatagcttgtgtggcatatttttgtagaaggaacagcgcaaagaattttagatataccgctgtacccgcaagtgaatgaggata 784  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  32059353 tggaacaaagagcttgtgcggcatatttttgtagaaggaacagcgcaaagaattttagatataccgctgtacccacaagtgaatgaggata 32059443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 547 - 614
Target Start/End: Complemental strand, 32059255 - 32059188
Alignment:
Q  547 caatagatagtaggatccggatttaatattcctatgataggagagccttggttgggtgctagctctag 614  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32059255 caatagatagtaggatccggatttaatattcctatgataggagagccttggttgggtgctagctctag 32059188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 400 - 581
Target Start/End: Original strand, 16331492 - 16331673
Alignment:
Q  400 caaactgaaccggatactctagttgctaaggtgtttaaggcaaggtattatcctcatagtaattaccttggtttaaagttaggacataatcctagatttg 499  Q
    |||||||||||| | ||| ||||| | ||||| || |  |||||||||| ||||||| ||||||| ||  | | ||| ||||||||||||||||| ||||    
T  16331492 caaactgaaccgaacactttagtttccaaggttttcagtgcaaggtattttcctcatggtaattatctcaggtcaaaattaggacataatcctagttttg 16331591  T
Q  500 tttggtggaatatttttagctcaaaattggttgttagtcatggcgcgcaatagatagtaggatccggatttaatattcctat 581  Q
    ||||| |||  ||||||||| ||||| ||||||| || ||||| |||| || ||  |||||||| || | | ||||||||||    
T  16331592 tttggcggagcatttttagcgcaaaactggttgtgaggcatggagcgcgatggaaggtaggatcaggttatgatattcctat 16331673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 7e-39; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 74 - 581
Target Start/End: Original strand, 3236931 - 3237424
Alignment:
Q  74 agagtatggcaaaagatcaatatctggagtagtaagtgtttgtctaaagcgagaagggagattatgattaaattagtgctttagtcaattccatcatatg 173  Q
    ||||| |||||||  || |||| ||||||||| ||||||||||||| | |  |||||||| |||||||||| |  || ||| |||||||||| |||||||    
T  3236931 agagtgtggcaaagaattaatagctggagtagcaagtgtttgtctagatctggaagggaggttatgattaagtctgtccttcagtcaattccctcatatg 3237030  T
Q  174 tgatgagtattttcaaattacctaatacattactagatgaaatcgaggagatgataaatggcttttggtgggggaatggtggtgctaataagtaataata 273  Q
    ||||||| |||||     | |||||| | || ||||| ||||| ||| | ||| | |||| ||| ||||||||| |||| |||||    |||||||||      
T  3237031 tgatgagcatttttcggcttcctaattccttgctagaagaaattgagaaaatgttgaatgccttctggtgggggcatggcggtgc----aagtaataa-- 3237124  T
Q  274 gaggaatgcattggttgttgtgagacaaaccatcggttcacaaaaggcatggtggaatgggatttaaggatcttgcgggatttaatgatttaactatgca 373  Q
     |||||| |||||||||  ||| || |||   ||||||||||| |||||||||||||||||||| || ||||||||||  |||||||       ||   |    
T  3237125 -aggaattcattggttggcgtgggataaattgtcggttcacaagaggcatggtggaatgggattcaaagatcttgcggcgtttaatg-------tagcaa 3237216  T
Q  374 tgcttgggaaacaaggatggaagcttcaaactgaaccggatactctagttgctaaggtgtttaaggcaaggtattatcctcatagtaattaccttggttt 473  Q
    |||| || || ||||| |||||  | ||||||||||| || ||| ||||| | ||||| || ||||||||||||||||||||| ||||||| || || |     
T  3237217 tgctcggaaagcaagggtggaaattccaaactgaaccagacactttagtttccaaggttttcaaggcaaggtattatcctcatggtaattatctcgggtc 3237316  T
Q  474 aaagttaggacataatcctagatttgtttggtggaatatttttagctcaaaattggttgttagtcatggcgcgcaatagatagtaggatccggatttaat 573  Q
     || |||||||| |||||||| ||||||||| |||  ||||||||| ||||| ||||||| || ||||| |||| || ||  |||||||| || | | ||    
T  3237317 caaattaggacacaatcctagttttgtttggcggagcatttttagcgcaaaactggttgtgaggcatggagcgcgatggaaggtaggatcaggttatgat 3237416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 216
Target Start/End: Original strand, 34933491 - 34933637
Alignment:
Q  70 ggatagagtatggcaaaagatcaatatctggagtagtaagtgtttgtctaaagcgagaagggagattatgattaaattagtgctttagtcaattccatca 169  Q
    ||||||||| |||||||  |||| || |||||| ||||| ||||||||||||||  | |||||| ||||||| ||||  || ||| |  | ||||||||     
T  34933491 ggatagagtgtggcaaagaatcagtagctggagcagtaaatgtttgtctaaagccgggagggaggttatgatcaaatctgttcttcaagctattccatct 34933590  T
Q  170 tatgtgatgagtattttcaaattacctaatacattactagatgaaat 216  Q
    ||||| |||||||| || |  ||||| || ||||||||||| |||||    
T  34933591 tatgtcatgagtatctttaggttaccaaacacattactagaggaaat 34933637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 246
Target Start/End: Complemental strand, 14505693 - 14505517
Alignment:
Q  70 ggatagagtatggcaaaagatcaatatctggagtagtaagtgtttgtctaaagcgagaagggagattatgattaaattagtgctttagtcaattccatca 169  Q
    |||||| ||||||||||| || | ||| ||||| ||||| |||||||| |||||  | || ||| ||||||| ||||| || ||| |  | ||||||||     
T  14505693 ggatagggtatggcaaaaaataagtatttggagcagtaaatgtttgtccaaagcaggtagagaggttatgatcaaatttgttcttcaagctattccatct 14505594  T
Q  170 tatgtgatgagtattttcaaattacctaatacattactagatgaaatcgaggagatgataaatggcttttggtgggg 246  Q
    ||||| |||||||| ||||   |||| |||||  | || |||||||| ||| ||||||| ||||  |||||||||||    
T  14505593 tatgttatgagtatcttcaggctacccaatactctcctggatgaaatagagaagatgatgaatgctttttggtgggg 14505517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 71 - 181
Target Start/End: Complemental strand, 8970103 - 8969993
Alignment:
Q  71 gatagagtatggcaaaagatcaatatctggagtagtaagtgtttgtctaaagcgagaagggagattatgattaaattagtgctttagtcaattccatcat 170  Q
    |||||||| ||||| ||||| | || |||||| ||||| ||||||||||||||  |||||||| | ||||| ||||  || ||| | || |||||||| |    
T  8970103 gatagagtgtggcagaagattagtagctggagcagtaaatgtttgtctaaagcaggaagggaggtcatgatcaaatctgttcttcaatctattccatcct 8970004  T
Q  171 atgtgatgagt 181  Q
    |||| ||||||    
T  8970003 atgttatgagt 8969993  T

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Target: chr8 (Bit Score: 74; Significance: 2e-33; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 71 - 358
Target Start/End: Original strand, 39530618 - 39530898
Alignment:
Q  71 gatagagtatggcaaaagatcaatatctggagtagtaagtgtttgtctaaagcgagaagggagattatgattaaattagtgctttagtcaattccatcat 170  Q
    |||||||| ||||| || || ||||  ||||||||||||||| ||||||||||| || | ||  ||||||| |||| ||| ||| |||| ||  | || |    
T  39530618 gatagagtgtggcagaaaataaatagttggagtagtaagtgtctgtctaaagcgggacgagatgttatgatcaaatcagttcttcagtctatctcgtcgt 39530717  T
Q  171 atgtgatgagtattttcaaattacctaatacattactagatgaaatcgaggagatgataaatggcttttggtgggggaatggtggtgctaataagtaata 270  Q
    |||| ||||| || ||||  ||||| ||||| ||||| || ||||||||  ||||||| |||| ||||||||||||||||||||| ||       ||| |    
T  39530718 atgttatgagcatcttcaggttaccgaatactttacttgaggaaatcgaaaagatgatgaatgccttttggtgggggaatggtggcgc-------taaca 39530810  T
Q  271 atagaggaatgcattggttgttgtgagacaaaccatcggttcacaaaaggcatggtggaatgggatttaaggatcttgcgggatttaa 358  Q
    ||||||||||||||||||| |  ||  ||||||  |||||||| ||||||||||| |||||||| |||||||||||||||| ||||||    
T  39530811 atagaggaatgcattggttataatggaacaaactttcggttcataaaaggcatggaggaatgggttttaaggatcttgcggcatttaa 39530898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 373 - 504
Target Start/End: Complemental strand, 11109188 - 11109057
Alignment:
Q  373 atgcttgggaaacaaggatggaagcttcaaactgaaccggatactctagttgctaaggtgtttaaggcaaggtattatcctcatagtaattaccttggtt 472  Q
    |||||||| ||||||||||||||||| |||||| |||  |||||| |||||||||||||||| |||||||||||||  ||||  |||||||  ||||| |    
T  11109188 atgcttggaaaacaaggatggaagctccaaacttaacttgatactttagttgctaaggtgttcaaggcaaggtatttccctcgaagtaattttcttgggt 11109089  T
Q  473 taaagttaggacataatcctagatttgtttgg 504  Q
     ||| || |||||||||||||| |||||||||    
T  11109088 caaaattgggacataatcctagttttgtttgg 11109057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 373 - 500
Target Start/End: Complemental strand, 11595346 - 11595219
Alignment:
Q  373 atgcttgggaaacaaggatggaagcttcaaactgaaccggatactctagttgctaaggtgtttaaggcaaggtattatcctcatagtaattaccttggtt 472  Q
    |||||||| ||||||||||||||||| ||||||||||| |||||| || ||||||||||||| |||||||| ||||  |||| ||||||||  ||||| |    
T  11595346 atgcttggaaaacaaggatggaagctccaaactgaacctgatactttatttgctaaggtgttcaaggcaagctattcccctcgtagtaattttcttgggt 11595247  T
Q  473 taaagttaggacataatcctagatttgt 500  Q
     ||| || |||||||||||||| |||||    
T  11595246 caaaattgggacataatcctagttttgt 11595219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 405 - 494
Target Start/End: Original strand, 39530925 - 39531014
Alignment:
Q  405 tgaaccggatactctagttgctaaggtgtttaaggcaaggtattatcctcatagtaattaccttggtttaaagttaggacataatcctag 494  Q
    |||||| ||| |||| || ||||||||||||||||| | ||| || ||  ||||||||| |||||||| |||| | ||||| ||||||||    
T  39530925 tgaaccagattctcttgtggctaaggtgtttaaggctaagtactacccaaatagtaatttccttggttcaaagctgggacacaatcctag 39531014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 6e-24; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 373 - 533
Target Start/End: Original strand, 37590200 - 37590360
Alignment:
Q  373 atgcttgggaaacaaggatggaagcttcaaactgaaccggatactctagttgctaaggtgtttaaggcaaggtattatcctcatagtaattaccttggtt 472  Q
    |||||||||||||||||||||||| ||||||||||| ||||||| || ||| |||||||||| || |||||||| | ||||| | |||| || ||||| |    
T  37590200 atgcttgggaaacaaggatggaagtttcaaactgaatcggatacgctggtttctaaggtgttcaaagcaaggtactttcctcttggtaactatcttgggt 37590299  T
Q  473 taaagttaggacataatcctagatttgtttggtggaa-tatttttagctcaaaattggttgt 533  Q
     |||||||||||| ||||||| |||| |||||  ||| ||| |||||  |||||||||||||    
T  37590300 caaagttaggacacaatccta-atttttttgggcgaagtatatttagtgcaaaattggttgt 37590360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 399 - 542
Target Start/End: Original strand, 33097813 - 33097956
Alignment:
Q  399 tcaaactgaaccggatactctagttgctaaggtgtttaaggcaaggtattatcctcatagtaattaccttggtttaaagttaggacataatcctagattt 498  Q
    |||||||||||| || ||||||||| | ||||| || ||| ||||||||| ||||||| | ||||| || || | ||| ||||||||||||||||| |||    
T  33097813 tcaaactgaaccagacactctagtttccaaggttttcaagtcaaggtattttcctcatggcaattatctcgggtcaaaattaggacataatcctagtttt 33097912  T
Q  499 gtttggtggaatatttttagctcaaaattggttgttagtcatgg 542  Q
     ||||| |||  ||||||| | ||||| ||||||| || |||||    
T  33097913 ctttggcggagcatttttaacgcaaaactggttgtgaggcatgg 33097956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 71 - 168
Target Start/End: Original strand, 4166664 - 4166761
Alignment:
Q  71 gatagagtatggcaaaagatcaatatctggagtagtaagtgtttgtctaaagcgagaagggagattatgattaaattagtgctttagtcaattccatc 168  Q
    |||||||||||||| |||||||||| ||||||||| || || |||||||||||  |||||||| | ||||| |||| ||| ||| | || ||||||||    
T  4166664 gatagagtatggcagaagatcaatagctggagtagcaaatgcttgtctaaagcaggaagggaggtcatgatcaaatcagttcttcaatctattccatc 4166761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 98 - 228
Target Start/End: Complemental strand, 21086688 - 21086558
Alignment:
Q  98 tggagtagtaagtgtttgtctaaagcgagaagggagattatgattaaattagtgctttagtcaattccatcatatgtgatgagtattttcaaattaccta 197  Q
    ||||| ||||| ||||||||||||||  |||||||  | ||||| ||||  || ||| | || |||||||| ||||| |||||||| |||| |||||| |    
T  21086688 tggagcagtaaatgtttgtctaaagcaggaagggaagtcatgataaaatcggttcttcaatctattccatcctatgttatgagtatcttcagattaccaa 21086589  T
Q  198 atacattactagatgaaatcgaggagatgat 228  Q
    | || ||  |||||||||| ||| |||||||    
T  21086588 acactttgttagatgaaattgagaagatgat 21086558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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