View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20384_high_30 (Length: 532)

Name: NF20384_high_30
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20384_high_30
NF20384_high_30
[»] chr5 (4 HSPs)
chr5 (325-520)||(24882377-24882572)
chr5 (111-279)||(24882161-24882330)
chr5 (5-105)||(22255674-22255774)
chr5 (144-279)||(24879650-24879785)
[»] scaffold0268 (1 HSPs)
scaffold0268 (16-111)||(4242-4337)
[»] chr8 (5 HSPs)
chr8 (13-111)||(122890-122988)
chr8 (14-105)||(16533919-16534010)
chr8 (5-111)||(9875106-9875212)
chr8 (13-111)||(23486018-23486116)
chr8 (13-111)||(23481196-23481294)
[»] chr6 (4 HSPs)
chr6 (5-105)||(24037993-24038093)
chr6 (5-105)||(2189800-2189893)
chr6 (57-113)||(641273-641329)
chr6 (40-111)||(30402690-30402761)
[»] scaffold0031 (1 HSPs)
scaffold0031 (14-105)||(81272-81363)
[»] chr7 (2 HSPs)
chr7 (5-104)||(17344593-17344692)
chr7 (5-113)||(13909172-13909280)
[»] chr2 (1 HSPs)
chr2 (18-111)||(29063407-29063500)
[»] chr3 (1 HSPs)
chr3 (63-111)||(36679744-36679792)
[»] scaffold0122 (1 HSPs)
scaffold0122 (54-112)||(19047-19105)
[»] scaffold0049 (1 HSPs)
scaffold0049 (39-105)||(6495-6561)


Alignment Details
Target: chr5 (Bit Score: 153; Significance: 7e-81; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 325 - 520
Target Start/End: Original strand, 24882377 - 24882572
Alignment:
Q  325 accttgacaccttatgtaagcctcc-attggtaatttttcatacataaagataatttatattgaaattaatttgttcattttgtctatagctattaatta 423  Q
    ||||||||||||||||||||| |   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  24882377 accttgacaccttatgtaagcattatattggtaatttttcatacataaagataatttatattgaaattaatttgttcattttgtctgtagctattaatta 24882476  T
Q  424 attaccatctgtctgatgatgtatatacaattgacttttcatattccaaaccaaagtatcaatctttattcgggttatgtttgataatagtaataat 520  Q
    |||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  24882477 attaccctctgt-tgatgatgtatatacaattgacttttcatattccaaagcaaagtatcaatatttattcgggttatgtttgataatagtaataat 24882572  T

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Target: chr5; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 111 - 279
Target Start/End: Original strand, 24882161 - 24882330
Alignment:
Q  111 cgtgagaaatagatattaaaggggaagaaaaagggaaatatattatgtgagccttttaccactgtatctaaaggatctgcaaaattatatggtt-aaaaa 209  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||| ||| |||||||| |||||    
T  24882161 cgtgagaaatagatattaaaggggaagaaaaagggaaatatattttgtgagccctttaccactatatctaaaggatctgcacaatcatatggttaaaaaa 24882260  T
Q  210 ggatcttgcatggtgcaccactagaaccatttgtgcatattacaattattcaatactaatatatcttgtc 279  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  24882261 ggatcttgcatgctgcaccactagaaccatttgttcatattacaattattcaatactaatatatcttgtc 24882330  T

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Target: chr5; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 5 - 105
Target Start/End: Complemental strand, 22255774 - 22255674
Alignment:
Q  5 tcgaagaatataataataaatcaacggtccggatttgctttcaggtcgaaaatgcacgatttgtgcatggtgcacaaattgtatatttgtccataccaaa 104  Q
    ||||| || ||||||||||||||| ||||| ||||||||||||||| |||||||||| ||||||||||||||||||||||| || |||||||||||||||    
T  22255774 tcgaataaaataataataaatcaatggtccagatttgctttcaggttgaaaatgcacaatttgtgcatggtgcacaaattgcatgtttgtccataccaaa 22255675  T
Q  105 c 105  Q
    |    
T  22255674 c 22255674  T

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Target: chr5; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 144 - 279
Target Start/End: Original strand, 24879650 - 24879785
Alignment:
Q  144 ggaaatatattatgtgagccttttaccactgtatctaaaggatctgcaaaattatatggttaaaaaggatcttgcatggtgcaccactagaaccatttgt 243  Q
    ||||||||||||||||| |||||||||||| ||| ||| |||| |    ||| ||||| ||||||||||||||||||| |||||||||| ||||||||||    
T  24879650 ggaaatatattatgtgatccttttaccactatatttaacggatttttccaatcatatgattaaaaaggatcttgcatgatgcaccactaaaaccatttgt 24879749  T
Q  244 gcatattacaattattcaatactaatatatcttgtc 279  Q
    |||||||||| |||  |||||  ||||||| |||||    
T  24879750 gcatattacagttaaccaatataaatatatattgtc 24879785  T

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Target: scaffold0268 (Bit Score: 88; Significance: 5e-42; HSPs: 1)
Name: scaffold0268
Description:

Target: scaffold0268; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 16 - 111
Target Start/End: Complemental strand, 4337 - 4242
Alignment:
Q  16 aataataaatcaacggtccggatttgctttcaggtcgaaaatgcacgatttgtgcatggtgcacaaattgtatatttgtccataccaaaccccacc 111  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  4337 aataataaatcaacggtccggatttgctttcaggttgaaaatgcacaatttgtgcatggtgcacaaattgtatatttgtccataccaaaccccacc 4242  T

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Target: chr8 (Bit Score: 75; Significance: 3e-34; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 13 - 111
Target Start/End: Complemental strand, 122988 - 122890
Alignment:
Q  13 tataataataaatcaacggtccggatttgctttcaggtcgaaaatgcacgatttgtgcatggtgcacaaattgtatatttgtccataccaaaccccacc 111  Q
    |||| ||||||||||| ||||| ||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  122988 tatattaataaatcaatggtccagatttgctttcaggttgaaaatgcacaatttgtacatggtgcacaaattgtatatttgtccataccaaaccccacc 122890  T

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Target: chr8; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 14 - 105
Target Start/End: Complemental strand, 16534010 - 16533919
Alignment:
Q  14 ataataataaatcaacggtccggatttgctttcaggtcgaaaatgcacgatttgtgcatggtgcacaaattgtatatttgtccataccaaac 105  Q
    ||||||||||||||| ||| | ||||||||||||||| |||||||||| |||| |||||| |||||||||||||||||||||||||||||||    
T  16534010 ataataataaatcaatggttcagatttgctttcaggttgaaaatgcacaatttatgcatgatgcacaaattgtatatttgtccataccaaac 16533919  T

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Target: chr8; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 5 - 111
Target Start/End: Original strand, 9875106 - 9875212
Alignment:
Q  5 tcgaagaatataataataaatcaacggtccggatttgctttcaggtcgaaaatgcacgatttgtgcatggtgcacaaattgtat-atttgtccataccaa 103  Q
    ||||| || ||| ||||||||||||||| | |||| |||||||||| |||||||||| |||||||||||||||||||| | ||| |||||||||||||||    
T  9875106 tcgaataaaatactaataaatcaacggttcagattggctttcaggttgaaaatgcacaatttgtgcatggtgcacaaa-tctatcatttgtccataccaa 9875204  T
Q  104 accccacc 111  Q
    ||||||||    
T  9875205 accccacc 9875212  T

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Target: chr8; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 13 - 111
Target Start/End: Original strand, 23486018 - 23486116
Alignment:
Q  13 tataataataaatcaacggtccggatttgctttcaggtcgaaaatgcacgatttgtgcatggtgcacaaattgtatatttgtccataccaaaccccacc 111  Q
    |||| ||||||||||| ||||| |||||||||||||||   |||||||| |||||||||||||||||||||| | ||||||| |||||||||| |||||    
T  23486018 tatattaataaatcaatggtccagatttgctttcaggttttaaatgcacaatttgtgcatggtgcacaaattttgtatttgtgcataccaaactccacc 23486116  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 13 - 111
Target Start/End: Original strand, 23481196 - 23481294
Alignment:
Q  13 tataataataaatcaacggtccggatttgctttcaggtcgaaaatgcacgatttgtgcatggtgcacaaattgtatatttgtccataccaaaccccacc 111  Q
    |||| ||||||||||| || || |||||||| |||| |   |||||||| |||| ||||||||||||||||  | ||||||| |||| ||||| |||||    
T  23481196 tatattaataaatcaatggcccagatttgctgtcagcttttaaatgcacaatttatgcatggtgcacaaatcttgtatttgtgcatatcaaactccacc 23481294  T

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Target: chr6 (Bit Score: 69; Significance: 1e-30; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 5 - 105
Target Start/End: Original strand, 24037993 - 24038093
Alignment:
Q  5 tcgaagaatataataataaatcaacggtccggatttgctttcaggtcgaaaatgcacgatttgtgcatggtgcacaaattgtatatttgtccataccaaa 104  Q
    ||||| || ||||||||||||||| ||||| ||||||||||||||| |||||||||| ||||||||| |||||||||||||||| |||||||||||||||    
T  24037993 tcgaataaaataataataaatcaatggtccagatttgctttcaggttgaaaatgcacaatttgtgcacggtgcacaaattgtatgtttgtccataccaaa 24038092  T
Q  105 c 105  Q
    |    
T  24038093 c 24038093  T

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Target: chr6; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 5 - 105
Target Start/End: Complemental strand, 2189893 - 2189800
Alignment:
Q  5 tcgaagaatataataataaatcaacggtccggatttgctttcaggtcgaaaatgcacgatttgtgcatggtgcacaaattgtatatttgtccataccaaa 104  Q
    ||||| || ||||||||||||||| ||||| ||||||||||||||| |||||||||| ||       |||||||||||||||||||||||||||||||||    
T  2189893 tcgaataaaataataataaatcaatggtccagatttgctttcaggttgaaaatgcacaat-------tggtgcacaaattgtatatttgtccataccaaa 2189801  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 57 - 113
Target Start/End: Original strand, 641273 - 641329
Alignment:
Q  57 tgcacgatttgtgcatggtgcacaaattgtatatttgtccataccaaaccccaccgt 113  Q
    ||||| |||||||||||||||||||||| | ||||||| |||||||||| |||||||    
T  641273 tgcacaatttgtgcatggtgcacaaattttgtatttgtgcataccaaactccaccgt 641329  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 111
Target Start/End: Original strand, 30402690 - 30402761
Alignment:
Q  40 tgctttcaggtcgaaaatgcacgatttgtgcatggtgcacaaattgtatatttgtccataccaaaccccacc 111  Q
    |||||||||||  ||||||||| | || |||| |||||||||||  ||| |||||||||||||||| |||||    
T  30402690 tgctttcaggttaaaaatgcacaacttttgcaaggtgcacaaatcttatgtttgtccataccaaacgccacc 30402761  T

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Target: scaffold0031 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 14 - 105
Target Start/End: Complemental strand, 81363 - 81272
Alignment:
Q  14 ataataataaatcaacggtccggatttgctttcaggtcgaaaatgcacgatttgtgcatggtgcacaaattgtatatttgtccataccaaac 105  Q
    ||||||||||||||| ||||| ||||||||||||||| |||||||||| |||||||||||||||| ||||||||| ||||||||||||||||    
T  81363 ataataataaatcaatggtccagatttgctttcaggttgaaaatgcacaatttgtgcatggtgcataaattgtatgtttgtccataccaaac 81272  T

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Target: chr7 (Bit Score: 68; Significance: 4e-30; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 17344593 - 17344692
Alignment:
Q  5 tcgaagaatataataataaatcaacggtccggatttgctttcaggtcgaaaatgcacgatttgtgcatggtgcacaaattgtatatttgtccataccaaa 104  Q
    ||||| || ||||||||||||||| ||| | ||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  17344593 tcgaataaaataataataaatcaatggttcagatttgctttcaggttgaaaatgcacaatttgtgcatggtgcacaaattgtatgtttgtccataccaaa 17344692  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 5 - 113
Target Start/End: Complemental strand, 13909280 - 13909172
Alignment:
Q  5 tcgaagaatataataataaatcaacggtccggatttgctttcaggtcgaaaatgcacgatttgtgcatggtgcacaaattgtatatttgtccataccaaa 104  Q
    ||||| || ||| ||||||||||| || || |||||| ||||||||   |||||||| |||||||||||||||||||||  ||||||||| |||||||||    
T  13909280 tcgaataaaatattaataaatcaatggcccagatttgatttcaggttttaaatgcacaatttgtgcatggtgcacaaatcttatatttgtgcataccaaa 13909181  T
Q  105 ccccaccgt 113  Q
    | |||||||    
T  13909180 ctccaccgt 13909172  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 29063500 - 29063407
Alignment:
Q  18 taataaatcaacggtccggatttgctttcaggtcgaaaatgcacgatttgtgcatggtgcacaaattgtatatttgtccataccaaaccccacc 111  Q
    ||||||||||| ||||| |||||  |||||| |   |||||||| |||||||||||||||||||||| ||| ||||| |||||||||| |||||    
T  29063500 taataaatcaatggtccagattttatttcagcttttaaatgcacaatttgtgcatggtgcacaaattctatctttgtgcataccaaactccacc 29063407  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 36679792 - 36679744
Alignment:
Q  63 atttgtgcatggtgcacaaattgtatatttgtccataccaaaccccacc 111  Q
    |||||||||||||||||||||| | ||||||| |||||||||| |||||    
T  36679792 atttgtgcatggtgcacaaattttgtatttgtgcataccaaactccacc 36679744  T

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Target: scaffold0122 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 54 - 112
Target Start/End: Complemental strand, 19105 - 19047
Alignment:
Q  54 aaatgcacgatttgtgcatggtgcacaaattgtatatttgtccataccaaaccccaccg 112  Q
    |||||||| | |||||||||||||||||||| | | ||||| |||||||||| ||||||    
T  19105 aaatgcacaagttgtgcatggtgcacaaattctttctttgtgcataccaaacgccaccg 19047  T

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Target: scaffold0049 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 105
Target Start/End: Original strand, 6495 - 6561
Alignment:
Q  39 ttgctttcaggtcgaaaatgcacgatttgtgcatggtgcacaaattgtatatttgtccataccaaac 105  Q
    ||||||||||||  ||||||||| | ||||||||||||| |||||  | | ||||||||||||||||    
T  6495 ttgctttcaggtttaaaatgcacaacttgtgcatggtgcccaaatattgtgtttgtccataccaaac 6561  T

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