View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_high_35 (Length: 514)
Name: NF20384_high_35
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_high_35 |
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Alignment Details
Target: chr2 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 37 - 503
Target Start/End: Original strand, 4817203 - 4817669
Alignment:
| Q |
37 |
ttatttataaattatagtagatgtaattaggaatgttatataccacttgttgtgactcaataaagttcttaggcaacgaatgatcattattgtttgctga |
136 |
Q |
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| T |
4817203 |
ttatttataaattatagtagatgtaattaggaatgttatataccacttgttgtgactcaataaagttcttaggcaacgaatgatcattattgtttgctga |
4817302 |
T |
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| Q |
137 |
aatgatatgtgttgatcattcattctttttcctatttagctggtcttcatgactaattatacatctcacattctaattttcattgcctaagattgcaatt |
236 |
Q |
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| T |
4817303 |
aatgatatgtgttgaccattcattctttttcctatttagctggtcttcatgactaattatacatctcacattctaattttcattgcctaagattgcaatt |
4817402 |
T |
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| Q |
237 |
tcaaactaggagaggaaaaaacgggtcaaaacaaaaatttcgaccatccacaaataatgggagacattagaacctcaaagaacaaacagaaaaaataaac |
336 |
Q |
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| T |
4817403 |
tcaaactaggagaggaaaaaacgggtcaaaacaaaaatttcgaccatccacaaataatgggagacattagaacctcaaagaacaaacagaaaaaataaac |
4817502 |
T |
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| Q |
337 |
agaaactagtttgatccattatttattttagtataaaatgcaagcccttcttcattgcaaacacaccatcacctttaattaaagtaaattaattttcata |
436 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4817503 |
agaaactagtttgatccattatttattttagtataaaatgcaagtccttcttcattgcaaacacaccatcacctttaattaaagtaaattaattttcata |
4817602 |
T |
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| Q |
437 |
tattcataccaacaatatcaagaacaatggcaaagtctacaatcccccttgtcttcaccctttgctt |
503 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4817603 |
tactcataccaacaatatcaagaacaatggcaaagtctacaatcccccttgtcttcaccctttgctt |
4817669 |
T |
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