View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_high_40 (Length: 506)
Name: NF20384_high_40
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_high_40 |
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Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-113; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 195 - 493
Target Start/End: Original strand, 22276301 - 22276600
Alignment:
| Q |
195 |
tgagaagaattcattacgtatgtgatataaagttttggtacacgtccgttcgtagtactagtattatctaattaagtatataagttatcttaatattgc- |
293 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
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| T |
22276301 |
tgagaagaattcattacgtatgtgatataaagttccggtacacgtcggttcgtagtactaatattacctaattaagtatataagttatcttaatattgca |
22276400 |
T |
|
| Q |
294 |
aaaaagtagaaaaattatagtaatctcctacaacaaagtagtgcacattttcagaaaca-nnnnnnnatattcattttgtttttgtcagtgttattttgc |
392 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||| |||||||||||||||| |||||||||||||||| |
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| T |
22276401 |
aaaaagtagaaaaattatagtaatctcctgcaacaaagtagtg-acatttttagaaacattttttttatattcattttgttttagtcagtgttattttgc |
22276499 |
T |
|
| Q |
393 |
aaaaatacgttctctttctccaagctacaaagagattttcatgcaaaatttatttacttccctaaagctttttctttatcttttatctcctactcaactt |
492 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
22276500 |
aaaaatatgttctctttctccaagctacaaagagattttcatgtaaaatttatttacttcattaaagctttttctttatcttttatctcctactcaactt |
22276599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 19 - 198
Target Start/End: Original strand, 22275023 - 22275198
Alignment:
| Q |
19 |
aatgtctatgctagtaactagtaaagttaatgtgatagctatttcctattttgttatagtagttaagagttagttacatccacttcaaactaactgattg |
118 |
Q |
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| T |
22275023 |
aatgtctatgctagtaactagtaaagttaatgtgatagctatttcctattttgttttagtagttaagagttagttacatccacttcaaactaactgattg |
22275122 |
T |
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| Q |
119 |
tgaagggcaacttataaataaaaccgataggtaagtgtagctagctactatcagtatgataggatgatcatttttgtgag |
198 |
Q |
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| T |
22275123 |
tgaagggcaaattataaataaaaccgataggtaagtg----tagctactatcagtatgataggatgatcatttttgtgag |
22275198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 402 - 497
Target Start/End: Complemental strand, 11039000 - 11038906
Alignment:
| Q |
402 |
ttctctttctccaagctacaaagagattttcatgcaaaatttatttacttccctaaagctttttctttatcttttatctcctactcaacttcatct |
497 |
Q |
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||||||||||||||||| ||||||||||| || |||||||||||| | || | ||| |||| |||||||||||||||||||||||||||||||| |
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| T |
11039000 |
ttctctttctccaagctttaaagagatttt-atccaaaatttatttgcgtcacggaaggttttcctttatcttttatctcctactcaacttcatct |
11038906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 447
Target Start/End: Original strand, 10682660 - 10682732
Alignment:
| Q |
373 |
ttttgtcagtgttattttgcaaaaatacgttctctttctccaagctacaaagagattttcatgcaaaatttattt |
447 |
Q |
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|||| ||||||||||||||||| | | |||||||||||||||||| ||||||||||||| | |||||||||||| |
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| T |
10682660 |
ttttatcagtgttattttgcaagac-atgttctctttctccaagcttcaaagagattttc-tacaaaatttattt |
10682732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 402 - 492
Target Start/End: Complemental strand, 45982700 - 45982611
Alignment:
| Q |
402 |
ttctctttctccaagctacaaagagattttcatgcaaaatttatttacttccctaaagctttttctttatcttttatctcctactcaactt |
492 |
Q |
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||||||||||||| ||| |||||||||||| ||||||||||||||| | | | ||| |||| |||||| || |||||||||||||||| |
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| T |
45982700 |
ttctctttctccatgcttcaaagagatttt-atgcaaaatttatttgcaccgccgaaggttttcttttatcattcatctcctactcaactt |
45982611 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 220 - 315
Target Start/End: Original strand, 41486275 - 41486372
Alignment:
| Q |
220 |
tataaagttttggtacacgtccgttcgtagtactagtattatctaattaagtat-ataagttatcttaatattgcaaa-aagtagaaaaattatagta |
315 |
Q |
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||||||| || |||| |||| |||||||||||||||| ||| ||||||||||| ||||| ||||||||||||||||| |||||||| ||||||||| |
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| T |
41486275 |
tataaagattaggtatgcgtcggttcgtagtactagtactatttaattaagtataataagctatcttaatattgcaaacaagtagaaggattatagta |
41486372 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 242 - 315
Target Start/End: Original strand, 10850692 - 10850767
Alignment:
| Q |
242 |
gttcgtagtactagtattatctaattaagtata-taagttatcttaatattgcaaaaa-gtagaaaaattatagta |
315 |
Q |
| |
|
|||||||||||||||| || ||||||||||||| |||| ||||||||||||||||||| |||||| ||||||||| |
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| T |
10850692 |
gttcgtagtactagtaatacctaattaagtatagtaagctatcttaatattgcaaaaaggtagaaggattatagta |
10850767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 242 - 315
Target Start/End: Original strand, 10878206 - 10878281
Alignment:
| Q |
242 |
gttcgtagtactagtattatctaattaagtata-taagttatcttaatattgcaaaaa-gtagaaaaattatagta |
315 |
Q |
| |
|
|||||||||||||||| || ||||||||||||| |||| ||||||||||||||||||| |||||| ||||||||| |
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| T |
10878206 |
gttcgtagtactagtaatacctaattaagtatagtaagctatcttaatattgcaaaaaggtagaaggattatagta |
10878281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 384 - 497
Target Start/End: Complemental strand, 8235068 - 8234957
Alignment:
| Q |
384 |
ttattttgcaaaaatacgttctctttctccaagctacaaagagattttcatgcaaaatttatttacttccctaaagctttttctttatcttttatctcct |
483 |
Q |
| |
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||||||||||||| || ||||||||||||||| | |||||||||||| ||||||||||||||| | || | | |||| ||||||||||||||| | |
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| T |
8235068 |
ttattttgcaaaag-acattctctttctccaagtttcaaagagatttt-atgcaaaatttatttgcatcaccgtatgttttcctttatcttttatctaat |
8234971 |
T |
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| Q |
484 |
actcaacttcatct |
497 |
Q |
| |
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||||||| |||||| |
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|
| T |
8234970 |
actcaacctcatct |
8234957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 280 - 337
Target Start/End: Complemental strand, 26150563 - 26150504
Alignment:
| Q |
280 |
tatcttaatattgcaaaaa--gtagaaaaattatagtaatctcctacaacaaagtagtgc |
337 |
Q |
| |
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||||||||||||||||||| |||||| |||||||||| ||| |||||||||| |||||| |
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| T |
26150563 |
tatcttaatattgcaaaaaaagtagaagaattatagtagtctgctacaacaaactagtgc |
26150504 |
T |
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