View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20384_high_42 (Length: 499)
Name: NF20384_high_42
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_high_42 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] chr4 (3 HSPs) |
| |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 16 - 499
Target Start/End: Complemental strand, 12934016 - 12933533
Alignment:
| Q |
16 |
atctgcatctgtcttggcatattcctgactcatcatgaacgagtcaaatttcttataccattgtctaggtgcttgttttaatccatacaagctcttcttc |
115 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
12934016 |
atctgcatctgtcttggtatattcatgactcatcatgaacgagtcaaatttcttataccattgtcttggtgcttgttttaatccatacaagctcttcttc |
12933917 |
T |
|
| Q |
116 |
aatttgcaaaccaggtgctcctttcgagtcttctcaaatccttctggttgaaccatgtagatctcttcatctaaatctccatgaagaaatgcagtcttta |
215 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12933916 |
aatttgcaaaccaagtgctcctttcgagtcttctcaaatccttctggttgaaccatgtagatctcttcatctaaatctccatgaagaaatgcagtcttta |
12933817 |
T |
|
| Q |
216 |
cgtccatttgttcaagctccaaatccaagctagcaaccaatccaagtataactcgaattgaactcatcttaacaactgaagagaagatttcatcaaaatc |
315 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
12933816 |
catccatttgttcaagctccaaatccaagctagcaaccaatccgagtataactcgaattgaactcatcttaacaactggagagaagatttcatcaaaatc |
12933717 |
T |
|
| Q |
316 |
tattcctcgcttttgtccaaaaccttttacgactaagcgagctttgtacttcactagcttgtcaccatctttcttgagcttgaacacccatttatttttc |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
12933716 |
tattcctcgcttttgtccaaaaccttttacgactaagcgagctttgtacttcactagcttgtcaccatctttcttgagcttgaacacccatttattcttc |
12933617 |
T |
|
| Q |
416 |
aaggcttttctgccttcaggaagtttcacaagttcataagtatcatttttctgcaatgaatccatctcttcttgcattgctttc |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12933616 |
aaggcttttctgccttcaggaagtttcacaagttcataagtatcatttttctgcaatgaatccatctcttcttgcattgctttc |
12933533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 444; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 16 - 499
Target Start/End: Complemental strand, 14177286 - 14176803
Alignment:
| Q |
16 |
atctgcatctgtcttggcatattcctgactcatcatgaacgagtcaaatttcttataccattgtctaggtgcttgttttaatccatacaagctcttcttc |
115 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
14177286 |
atctgcatctgtcttggtatattcatgactcatcatgaacgagtcgaatttcttataccattgtcttggtgcttgttttaatccatacaagctcttcttc |
14177187 |
T |
|
| Q |
116 |
aatttgcaaaccaggtgctcctttcgagtcttctcaaatccttctggttgaaccatgtagatctcttcatctaaatctccatgaagaaatgcagtcttta |
215 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14177186 |
aatttgcaaaccaagtgctcctttcgagtcttctcaaatccttctggttgaaccatgtagatctcttcatctaaatctccatgaagaaatgcagtcttta |
14177087 |
T |
|
| Q |
216 |
cgtccatttgttcaagctccaaatccaagctagcaaccaatccaagtataactcgaattgaactcatcttaacaactgaagagaagatttcatcaaaatc |
315 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
14177086 |
catccatttgttcaagctccaaatccaagctagcaactaatccgagtataactcgaattgaactcatcttaacaactggagagaagatttcatcaaaatc |
14176987 |
T |
|
| Q |
316 |
tattcctcgcttttgtccaaaaccttttacgactaagcgagctttgtacttcactagcttgtcaccatctttcttgagcttgaacacccatttatttttc |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
14176986 |
tattcctcgcttttgtccaaaaccttttacgactaagcgagctttgtacttcactagcttgtcaccatctttcttgagcttgaacacccatttattcttc |
14176887 |
T |
|
| Q |
416 |
aaggcttttctgccttcaggaagtttcacaagttcataagtatcatttttctgcaatgaatccatctcttcttgcattgctttc |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14176886 |
aaggcttttctgccttcaggaagtttcacaagttcataagtatcatttttctgcaatgaatccatctcttcttgcattgctttc |
14176803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 16 - 499
Target Start/End: Original strand, 28608589 - 28609073
Alignment:
| Q |
16 |
atctgcatctgtcttggcatattcctgactcatcatgaacgagtcaaatttcttataccattgtctaggtgcttgttttaatccatacaagctcttcttc |
115 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
28608589 |
atctgcatctgtcttggtatattcatgactcatcatgaacgagtcaaatttcttataccattgtcttggtgcttgttttaatccatacaagctcttcttc |
28608688 |
T |
|
| Q |
116 |
aatttgcaaaccaggtgctcctttcgagtcttctcaaatccttctggttgaaccatgtagatctcttcatctaaatctccatgaagaaatgcagtcttta |
215 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28608689 |
aatttgcaaaccaagtgctcctttcgagtcttcttaaatccttctggttgaaccatgtagatctcttcatctaaatctccatgaagaaatgcagtcttta |
28608788 |
T |
|
| Q |
216 |
cgtccatttgttcaagctccaaatccaagctagcaaccaatccaagtataactcgaattgaactcatcttaacaactgaagagaagatttcatcaaaatc |
315 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
28608789 |
catccatttgttcaagctccaaatccaagctagcaactaatccgagtataactcgaattgaactcatcttaacaactggagagaagatttcatcaaaatc |
28608888 |
T |
|
| Q |
316 |
tattcctcgcttttgtccaaaaccttttacgactaagcgagctttgtacttcactagcttgtcaccatctttcttgagcttgaacacccatttatttttc |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
28608889 |
tattcctcgcttttgtccaaaaccttttacgactaagcgagctttgtacttcactagcttgtcaccatctttcttgagcttgaacacccatttattcttc |
28608988 |
T |
|
| Q |
416 |
aaggcttttctgccttcaggaagtttcacaagttcataagtatca-tttttctgcaatgaatccatctcttcttgcattgctttc |
499 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28608989 |
aaggcttttctgccttcaggaagtttcacaagttcataagtatcattttttctgcaatgaatccatctcttcttgcattgctttc |
28609073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 150 - 225
Target Start/End: Original strand, 6802395 - 6802470
Alignment:
| Q |
150 |
caaatccttctggttgaaccatgtagatctcttcatctaaatctcca-tgaagaaatgcagtctttacgtccatttg |
225 |
Q |
| |
|
|||| |||||||||||| |||||||||| ||||| |||||||||||| | |||||| ||||||||||| |||||||| |
|
|
| T |
6802395 |
caaaaccttctggttgatccatgtagatttcttcctctaaatctccatttaagaaa-gcagtctttacatccatttg |
6802470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 372; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 16 - 499
Target Start/End: Complemental strand, 15299802 - 15299323
Alignment:
| Q |
16 |
atctgcatctgtcttggcatattcctgactcatcatgaacgagtcaaatttcttataccattgtctaggtgcttgttttaatccatacaagctcttcttc |
115 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
15299802 |
atctgcatctgtcttggtatattcatgactcatcatgaacgagtaaaatttcttataccattgtcttggtgcttgtcttaatccatacaagctcttcttc |
15299703 |
T |
|
| Q |
116 |
aatttgcaaaccaggtgctcctttcgagtcttctcaaatccttctggttgaaccatgtagatctcttcatctaaatctccatgaagaaatgcagtcttta |
215 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
15299702 |
aatttgcaaaccaagtgctcctttcgagtcttctcaaatccttctggttgaaccatgtagatctcttcatctaaatatccatgaaga------gtcttta |
15299609 |
T |
|
| Q |
216 |
cgtccatttgttcaagctccaaatccaagctagcaaccaatccaagtataactcgaattgaactcatcttaacaactgaagaga--agatttcatcaaaa |
313 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
15299608 |
cgtccatttgttcaagctccaaacccaagctagcaaccaatccgagtataactcgaattgaactcatcttaacaactggagagagaagatttcatcaaaa |
15299509 |
T |
|
| Q |
314 |
tctattcctcgcttttgtccaaaaccttttacgactaagcgagctttgtacttcactagcttgtcaccatctttcttgagcttgaacacccatttatttt |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| | |
|
|
| T |
15299508 |
tctattcctcgcttttgtccaaaaccttttacgactaagagagctttgtatttcactagcttgtcactatctttcttgagcttgaacacccatttattct |
15299409 |
T |
|
| Q |
414 |
tcaaggcttttctgccttcaggaagtttcacaagttcataagtatcatttttctgcaatgaatccatctcttcttgcattgctttc |
499 |
Q |
| |
|
| |||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
15299408 |
ttaaggcttttctgatttcaggaagcttcacaagttcataagtatcatttttctgcaaggaatccatctcttcttacattgctttc |
15299323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 114
Target Start/End: Complemental strand, 6692255 - 6692200
Alignment:
| Q |
59 |
tcaaatttcttataccattgtctaggtgcttgttttaatccatacaagctcttctt |
114 |
Q |
| |
|
||||| ||| ||||||||||||| || |||||||||| ||||||||||||||||| |
|
|
| T |
6692255 |
tcaaacttcatataccattgtcttggagcttgttttaggccatacaagctcttctt |
6692200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 168 - 204
Target Start/End: Complemental strand, 50060116 - 50060080
Alignment:
| Q |
168 |
ccatgtagatctcttcatctaaatctccatgaagaaa |
204 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |
|
|
| T |
50060116 |
ccatgtagatctcttcctctaaatctccatgaagaaa |
50060080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 114
Target Start/End: Original strand, 796566 - 796621
Alignment:
| Q |
59 |
tcaaatttcttataccattgtctaggtgcttgttttaatccatacaagctcttctt |
114 |
Q |
| |
|
||||| ||| ||||||||||||| || |||||||||| ||||||||||||||||| |
|
|
| T |
796566 |
tcaaacttcatataccattgtcttggagcttgttttaggccatacaagctcttctt |
796621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 114
Target Start/End: Complemental strand, 8273261 - 8273206
Alignment:
| Q |
59 |
tcaaatttcttataccattgtctaggtgcttgttttaatccatacaagctcttctt |
114 |
Q |
| |
|
||||| ||| ||||||||||||| || |||||||||| ||||||||||||||||| |
|
|
| T |
8273261 |
tcaaacttcatataccattgtcttggagcttgttttaggccatacaagctcttctt |
8273206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 114
Target Start/End: Complemental strand, 19944205 - 19944150
Alignment:
| Q |
59 |
tcaaatttcttataccattgtctaggtgcttgttttaatccatacaagctcttctt |
114 |
Q |
| |
|
||||| ||| ||||||||||||| || |||||||||| ||||||||||||||||| |
|
|
| T |
19944205 |
tcaaacttcatataccattgtcttggagcttgttttaggccatacaagctcttctt |
19944150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University