View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_high_43 (Length: 499)
Name: NF20384_high_43
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_high_43 |
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Alignment Details
Target: chr2 (Bit Score: 458; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 4 - 483
Target Start/End: Original strand, 43549991 - 43550467
Alignment:
| Q |
4 |
cataggcaactctcaccaagaaaactaaagcgtcataacatccatatctcacagctagatgaagtactgtctcttcttctcttgtgggatagtgaaagta |
103 |
Q |
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| T |
43549991 |
cataggcaactctcaccaagaaaactaaagcgtcataacatccatatctcacagctagatgaagtactgtctcttcttctcttgtgggatagtgaaagta |
43550090 |
T |
|
| Q |
104 |
cgcagtacttactaccacaaaatagtcgagggttgagactttccccttaatcactgcaagatgcaatggtgtataaccattgttgttgtattgtaaagca |
203 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43550091 |
cgcagtacttactaccacaaaatagtcaagggttgagactttccccttaatcactgcaagatgcaatggtgtataaccattgttgttgtattgtaaagca |
43550190 |
T |
|
| Q |
204 |
agttttgaatcgcgacttagtaggatccatacaatctcaaagtgtcctttataacaagcatgatgcaatgctgtattccctttctcgtcgatcacttgaa |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43550191 |
agttttgaatcgcgacttagtaggatccatacaatctcaaagtgtcctttataacaagcatgatgcaatgctgtattccctttctcgtcgatcacttgaa |
43550290 |
T |
|
| Q |
304 |
taagatccggccacttgttcaacagctctctaacgacatctgcatagacaatcaaccgtttaggagataacttacatcagctatataagattttcagtcc |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43550291 |
taagatccggccacttgttcaacagctctctaacgacatctgcatagacaatcaaccgtttaggagataacttacatcagctatataagattttcagtcc |
43550390 |
T |
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| Q |
404 |
atcaccttcttattattagtgattaaattaagcttaatttcacttctgatccagagaaggtgatgggttgaaaatcttat |
483 |
Q |
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| T |
43550391 |
atcac---cttattattagtgattaaattaagcttaatttcacttttgatccagagaaggtgatgggttgaaaatcttat |
43550467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 17 - 429
Target Start/End: Original strand, 43554005 - 43554414
Alignment:
| Q |
17 |
caccaagaaaactaaagcgtcataacatccatatctcacagctagatgaagtactgtctcttcttctcttgtgggatagtgaaagtacgcagtacttact |
116 |
Q |
| |
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|||||||||||| ||||| ||||| |||||||||||||| |||| ||||| ||| ||||||||||||||||| |||| ||||| | |||| |||| || |
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| T |
43554005 |
caccaagaaaaccaaagcatcatagcatccatatctcacggctaaatgaaataccgtctcttcttctcttgttagataatgaaatgatgcagcacttcct |
43554104 |
T |
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| Q |
117 |
accacaaaatagtcgagggttgagactttccccttaatcactgcaagatgcaatggtgtataaccattgttgttgtattgtaaagcaagttttgaatcgc |
216 |
Q |
| |
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|||||||| |||||| | |||||||| || || || |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
43554105 |
gacacaaaatcatcgaggatcgagacttttccgttcattactgcaaggtgcaatggtgtataaccattgttgttgtattgtaaagcaacatttgaatcgc |
43554204 |
T |
|
| Q |
217 |
gacttagtaggatccatacaatctcaaagtgtcctttataacaagcatgatgcaatgctgtattccctttctcgtcgatcacttgaataagatccggcca |
316 |
Q |
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| ||||||||||||||||| |||| ||||||||||| |||||||||||||||||| | |||||| |||||||||||||||||| |||||| ||||| |
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| T |
43554205 |
gttttagtaggatccatacagtctctctgtgtcctttattacaagcatgatgcaatgccgaattcccattctcgtcgatcacttgagaaagatctggcca |
43554304 |
T |
|
| Q |
317 |
cttgttcaacagctctctaacgacatctgcatagacaatcaaccgtttaggagataacttacatcagctatataagattttcagtccatcaccttcttat |
416 |
Q |
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| ||||||||| ||||||||| | ||||||||||| | ||||| |||||||| ||| ||||||| | ||||||| |||| || |||||||| ||||| |
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| T |
43554305 |
cctgttcaacaactctctaacaatatctgcatagaaagtcaacagtttaggatatatcttacataaactatatagaatttccaatccatcac---cttat |
43554401 |
T |
|
| Q |
417 |
tattagtgattaa |
429 |
Q |
| |
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||||||||||||| |
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|
| T |
43554402 |
tattagtgattaa |
43554414 |
T |
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