View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20384_high_44 (Length: 496)
Name: NF20384_high_44
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_high_44 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 416; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 17 - 481
Target Start/End: Original strand, 38062199 - 38062667
Alignment:
| Q |
17 |
cataggaccgaccctcgaagtcgtggccgccgcttcggatgcaaatctgcaggccatggttttgggaacagattatggttgtttgaatttgggaaatatg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| | |||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38062199 |
cataggaccgaccctcgaagtcgtggccgccgcttcggattcgaatctgcaggtcatgtctttgggaacagattatggttgtttgaatttgggaaatatg |
38062298 |
T |
|
| Q |
117 |
tttaggtgtgataatgacaagaggtttcggtgttgttttggatgcaaatctgagattttgagcggtaaattggagtattgatgagtaagaggaattggtt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38062299 |
tttaggtgtgataatgacaagaggtttcggtgttgttttggatgcaaatctgagattttgagtggtaaattggagtattgatgagtaagaggaattggtt |
38062398 |
T |
|
| Q |
217 |
ttggtgtacacaagtttagacattgaagttgagttatgtgaataactatagagacattgtaggaaattttcttcatgtttagtagtatcaattgcagaat |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38062399 |
ttggtgtacacaagtttagacattgaagttgagttatgtgaataactatagagacattgtaggaaattttcttcatgtttagtagtatcaattgcagaat |
38062498 |
T |
|
| Q |
317 |
atgtgaatgaaaataaaacagcaattagttcaataatcaaatatgatcttagaggaatcattttttgttggttatgttatgcatatgctgctagaaaatt |
416 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38062499 |
atgtgaatgaaaagaaaacagcaattagtacaataatcaaatatgatcttagaggaatcattttttgttggttatgttatgcatatgctgctagaaaatt |
38062598 |
T |
|
| Q |
417 |
aatttataaaagaatt----tctagtagtagtgtggataatagattaattaaattaaagcgtgctaatt |
481 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38062599 |
aatttataaaataatttctctctagtagtagtgtggataatagattaattaaattaaagcgtgctaatt |
38062667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 17 - 382
Target Start/End: Complemental strand, 38058255 - 38057890
Alignment:
| Q |
17 |
cataggaccgaccctcgaagtcgtggccgccgcttcggatgcaaatctgcaggccatggttttgggaacagattatggttgtttgaatttgggaaatatg |
116 |
Q |
| |
|
|||||||||||||||| || || ||||| ||||||||||| | |||||||||| ||| |||| |||||||||||||||||||||||||||||||| || |
|
|
| T |
38058255 |
cataggaccgaccctcaaaatcatggccaccgcttcggattcgaatctgcaggttgtggatttgtgaacagattatggttgtttgaatttgggaaatctg |
38058156 |
T |
|
| Q |
117 |
tttaggtgtgataatgacaagaggtttcggtgttgttttggatgcaaatctgagattttgagcggtaaattggagtattgatgagtaagaggaattggtt |
216 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
38058155 |
tttaggtgtgataatgaaaagaggtttaggtgttgtgttggatgcaaatctgagattttgagttgtaaatttgagtatcgatgagtaagaggaattggtt |
38058056 |
T |
|
| Q |
217 |
ttggtgtacacaagtttagacattgaagttgagttatgtgaataactatagagacattgtaggaaattttcttcatgtttagtagtatcaattgcagaat |
316 |
Q |
| |
|
||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||||||||| |||| |
|
|
| T |
38058055 |
ttggtgtacacaacttcagagattgaagttgagttatgtgaataactatagagacattcaaggaaattttcttcatgtgtactagtatcaattgaagaag |
38057956 |
T |
|
| Q |
317 |
atgtgaatgaaaataaaacagcaattagttcaataatcaaatatgatcttagaggaatcatttttt |
382 |
Q |
| |
|
|||| |||||||||| | |||||||||| |||| | |||||||| ||||||| |||||||||| |
|
|
| T |
38057955 |
atgtatatgaaaataagagagcaattagtagaatagtaaaatatgagtttagaggcatcatttttt |
38057890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 26 - 385
Target Start/End: Complemental strand, 38072574 - 38072215
Alignment:
| Q |
26 |
gaccctcgaagtcgtggccgccgcttcggatgcaaatctgcaggccatggttttgggaacagattatggttgtttgaatttgggaaatatgtttaggtgt |
125 |
Q |
| |
|
||||||||||||||||||| || || || || | ||| |||| |||||||| ||||||||||||||||| ||||||||| |||||||| ||| ||||||| |
|
|
| T |
38072574 |
gaccctcgaagtcgtggccaccactacgaattcgaatttgcatgccatggtgttgggaacagattatggctgtttgaatatgggaaatttgtgtaggtgt |
38072475 |
T |
|
| Q |
126 |
gataatgacaagaggtttcggtgttgttttggatgcaaatctgagattttgagcggtaaattggagtattgatgagtaagaggaattggttttggtgtac |
225 |
Q |
| |
|
|||||||||||| ||||| |||||| |||| |||||||||||| |||||| | ||||| |||||||||||||||||||||||||||||| |||||| |
|
|
| T |
38072474 |
gataatgacaaggggttttggtgtttcattggttgcaaatctgaggttttgaattgaaaatttgagtattgatgagtaagaggaattggtttttgtgtac |
38072375 |
T |
|
| Q |
226 |
acaagtttagacattgaagttgagttatgtgaataactatagagacattgtaggaaattttcttcatgtttagtagtatcaattgcagaatatgtgaatg |
325 |
Q |
| |
|
|||| |||||| ||||||||| ||||||||||||||||||||||||||| |||||||| |||||||| | | |||||||||||| || |||| |||| |
|
|
| T |
38072374 |
acaactttagagattgaagttatgttatgtgaataactatagagacattgaaggaaattatcttcatgaggacttgtatcaattgcaaaagatgtaaatg |
38072275 |
T |
|
| Q |
326 |
aaaataaaacagcaattagttcaataatcaaatatgatcttagaggaatcattttttgtt |
385 |
Q |
| |
|
||||| || || |||||| |||| |||||||| | | |||||| ||||||||||||| |
|
|
| T |
38072274 |
aaaatgcaattgctattagtacaattgtcaaatataagcgtagaggcatcattttttgtt |
38072215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 60 - 408
Target Start/End: Complemental strand, 38081625 - 38081277
Alignment:
| Q |
60 |
aatctgcaggccatggttttgggaacagattatggttgtttgaatttgggaaatatgtttaggtgtgataatgacaagaggtttcggtgttgttttggat |
159 |
Q |
| |
|
|||||| |||||||| ||||||||||| ||||||| ||||||||| |||||| | | ||||||||| |||||||| ||||| |||||| | | |||| |
|
|
| T |
38081625 |
aatctggaggccatgattttgggaacaaattatggctgtttgaatatgggaaggttctagaggtgtgatgatgacaagtggttttggtgttttgtaggat |
38081526 |
T |
|
| Q |
160 |
gcaaatctgagattttgagcggtaaattggagtattgatgagtaagaggaattggttttggtgtacacaagtttagacattgaagttgagttatgtgaat |
259 |
Q |
| |
|
|||||||| |||||||||| ||||||| ||||| || ||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
38081525 |
gcaaatcttagattttgagttgtaaatttgagtactggtgagtaagagggattggttttggtgtacacaactttagagattgaagttgagttatgtgaat |
38081426 |
T |
|
| Q |
260 |
aactatagagacattgtaggaaattttcttcatgtttagtagtatcaattgcagaatatgtgaatgaaaataaaacagcaattagttcaataatcaaata |
359 |
Q |
| |
|
||||| | |||||||| ||||| || ||||||| || ||||||||||||||||| ||| |||||||||||| |||||| ||| ||| | |||||| |
|
|
| T |
38081425 |
aactagaaagacattgaaggaagttatcttcataagtattagtatcaattgcagaagatgcatatgaaaataaaatagcaataagtgcaacagacaaata |
38081326 |
T |
|
| Q |
360 |
tgatcttagaggaatcattttttgttggttatgttatgcatatgctgct |
408 |
Q |
| |
|
||| |||||||| |||||||| | || || ||||| |||||||| |||| |
|
|
| T |
38081325 |
tgagcttagaggcatcattttgttttagtaatgttgtgcatatgatgct |
38081277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 17 - 382
Target Start/End: Complemental strand, 38086093 - 38085719
Alignment:
| Q |
17 |
cataggaccgaccctcgaagtcgtggccgccgcttcggatgcaaatctgcaggccatggttttgggaacagattatggttgtttgaatttgggaaatatg |
116 |
Q |
| |
|
|||| ||| ||||||| |||||||| |||||||| || || | ||||||||||| |||| ||||||||| |||| ||||| |||||| |||||||| | |
|
|
| T |
38086093 |
cataagacagaccctcaaagtcgtgaccgccgctgcgaattcgaatctgcaggctgtggtattgggaacaaattacggttgcttgaatatgggaaatttc |
38085994 |
T |
|
| Q |
117 |
tttaggtgtgataatgacaagaggtttcggtgttgttttggatgcaaatctgagattttgagcggtaaattggagtattgatgagtaagaggaattggtt |
216 |
Q |
| |
|
| |||||||| ||| ||||| ||||| |||||| | |||| |||||||||||||||||||| | ||||||||||||||||| ||| || ||||||| | |
|
|
| T |
38085993 |
tagaggtgtgacaattacaagtggttttggtgttttgttggttgcaaatctgagattttgagttgaaaattggagtattgatgtgtatgatgaattggct |
38085894 |
T |
|
| Q |
217 |
ttggtgtacacaagtttagacattgaagttgagttatgtgaataactatagagacattgtaggaa---attttcttcat--gt----ttagtagtatcaa |
307 |
Q |
| |
|
||||||||||||| |||||| |||||||| |||||||||||||| |||||||||||||| ||||| ||| ||||||| || |||||||| ||| |
|
|
| T |
38085893 |
ttggtgtacacaactttagagattgaagtggagttatgtgaatagctatagagacattgaaggaagctattatcttcattagtagtagtagtagtaccaa |
38085794 |
T |
|
| Q |
308 |
ttgcagaatatgtgaatgaaaataaaacagcaattagttcaataatcaaatatgatcttagaggaatcatttttt |
382 |
Q |
| |
|
|||| ||| |||| ||||||||||||| |||||||||| ||||| ||| ||||| | |||| | |||||||||| |
|
|
| T |
38085793 |
ttgctgaagatgtaaatgaaaataaaatagcaattagtacaatagacaagtatgagcctagatgcatcatttttt |
38085719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University