View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_high_48 (Length: 487)
Name: NF20384_high_48
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_high_48 |
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Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 105 - 469
Target Start/End: Complemental strand, 11627307 - 11626932
Alignment:
| Q |
105 |
ttttctcattacctgaaattgatatgaggtcatcacacaagtagataactaattttctataaagaaatgaaacaaaatatgctgcaagagtttgtgtgtt |
204 |
Q |
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| T |
11627307 |
ttttctcattacctgaaattgatatgaggtcatcacacaagtagataactaattttctataaagaaatgaaacataatatgctgcaagagtttgtgtgtt |
11627208 |
T |
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| Q |
205 |
caatcaaaagctatgaaacaataacactcacacaaacacgtaaataccaatattaatttgacnnnnnnngtgacatgttagagagtgaacacgccttcaa |
304 |
Q |
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| T |
11627207 |
caaccaaaagctatgaaacaataacactgacacaaacacgtaaataccaatattaatttgacaaaaaaagtgacatgttagagagtcaacacgccttcaa |
11627108 |
T |
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| Q |
305 |
tctaaagtgttgatgttagatagactaaaagtaatcttaaagtttaaaagaaaaggaatcttaa---actactactattg--------tttatgaagcta |
393 |
Q |
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| T |
11627107 |
tctaaagtgtcgatgttagatagactaaaagtaatcttaaagtttaaaagaaaaggaatcttaaactactactactattgtttatgtctttatgaagcta |
11627008 |
T |
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| Q |
394 |
aaaacagtaattgtttatagaataaaaagaagcgcgtgaagtttgtcaactttatgttccttgattaatgcattat |
469 |
Q |
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| T |
11627007 |
aaaacagtaattgtttatagaatgaaaaaaagcgcgtgaagtttgtcaactttatgttccttgattaatgcattat |
11626932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 56 - 113
Target Start/End: Complemental strand, 11648953 - 11648896
Alignment:
| Q |
56 |
gttattcacttcattttacaagtaaaaacataagataaagatgcacgacttttctcat |
113 |
Q |
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| T |
11648953 |
gttattcaccccattttacaagtaaagacaggagatagagatgcacgacttttctcat |
11648896 |
T |
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