View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_high_51 (Length: 474)
Name: NF20384_high_51
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_high_51 |
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Alignment Details
Target: chr6 (Bit Score: 433; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 18 - 466
Target Start/End: Complemental strand, 805820 - 805372
Alignment:
| Q |
18 |
cccatgtgagcaagtttttaacacacttatagcttcaacattgggaaactacagcttgcatccaaaacaagcactaaaagaatttcatgtgtctcagatt |
117 |
Q |
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| T |
805820 |
cccatgtgagcaagtttttaacacacttatagcttcaacattgggaaactacagcttgcatccaaaacaagcactaaaagaatttcatgtgtctcagatt |
805721 |
T |
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| Q |
118 |
aatccgaggtgattaattcaccctacttctttgtgacagggttgtaagatgctacaaatgtcctgtgaagagcatgataaaatagctgcgaagagccaat |
217 |
Q |
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| T |
805720 |
aatccgaggtgattaattcaccctacttctttttgacagggttgtaagatgctacaaatgtcctgtgaagagcatgataaaatagctgcgaagagccaat |
805621 |
T |
|
| Q |
218 |
ttataacacacactactataggcaggtaggctgcactctgagcattaaatcacatatactttaccaaactacattaattatctcatttggatctaaaatc |
317 |
Q |
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| T |
805620 |
ttataacacacactactataggcaggtaggctgcactctgagcattaaatcacatatactttaccaaactacattaattatctcatttggatctaaaatc |
805521 |
T |
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| Q |
318 |
ttttgatatctcacacctacaactaaattaattatgtcatggtttcaactttcaaggttgtatttgtgtcagtgtgtcactgtcagtgatcgtgtaatgt |
417 |
Q |
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| T |
805520 |
ttttgatatctcacacctacaactaaattaattatgtcatggtttcaactttcaaggttgtatttgtgtcagtgtatcactgtcagtgatcgtgtaatgt |
805421 |
T |
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| Q |
418 |
tcagtatcgatgtctgtgtcggtacttcatagctcgaagttttcttctc |
466 |
Q |
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| T |
805420 |
tcagtatcgatgtctgtgtcggtatttcatagctcgaagtcttcttctc |
805372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 296 - 348
Target Start/End: Original strand, 1266242 - 1266294
Alignment:
| Q |
296 |
tatctcatttggatctaaaatcttttgatatctcacacctacaactaaattaa |
348 |
Q |
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| T |
1266242 |
tatctcatttagatctaaaatcttttgatatctcacacctacaactaaattaa |
1266294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 101; Significance: 7e-50; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 86 - 269
Target Start/End: Complemental strand, 36053975 - 36053791
Alignment:
| Q |
86 |
aagcactaaaagaatttcatgtgtctcagattaatccgaggtgattaattc----accctacttctttgtgacagggttgtaagatgctacaaatgtcct |
181 |
Q |
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||||||||||||||||| |||| |||| ||| ||||||||||||||||| ||| ||||| | |||||||||||||||||||||||||||||| |
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| T |
36053975 |
aagcactaaaagaatttattgtgactcacatttatccgaggtgattaattatttgaccttacttttcccggacagggttgtaagatgctacaaatgtcct |
36053876 |
T |
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| Q |
182 |
gtgaagagcatgataaaatagctgcgaagagccaatttataacacacactactataggcaggtaggctgcactctgagcattaaatca |
269 |
Q |
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| T |
36053875 |
gtgaagagcatgataaaatagctgcaaagagccaatttataacacac---actataggcaggtaggctgcaatctgagcattaaatca |
36053791 |
T |
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