View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_high_53 (Length: 460)
Name: NF20384_high_53
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_high_53 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 400; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 18 - 460
Target Start/End: Original strand, 31655139 - 31655581
Alignment:
| Q |
18 |
aaaagtatatatcttgagaaatttcttactacacgtacttatgttacatcgaaattacatatcttgtgtgcccttcacgcacccctttggcctgtgtgaa |
117 |
Q |
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| T |
31655139 |
aaaagtatatatcttgagaaatttcttactacacgtacttatgttacatcgaaattacatatcttgtgtgctcttcacgcactcctttggcctgtgtgaa |
31655238 |
T |
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| Q |
118 |
atgaaactgatcgatgaacttttgtctaaatactccaaaatgggtacaaattttaaatttgcaagttggaagtaccaagttgaataaaaggtcgtgcacc |
217 |
Q |
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| T |
31655239 |
atgaaactgatcgatgaacttttgtctaaatactccaaa-tgggatcaaattttaaatttgcaagtaggaagtaccaagttgaataaaaggtcgtgcacc |
31655337 |
T |
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| Q |
218 |
tctttttctctcttcatatccatcattatttaacctatagttc-tagttatagcaaattgatgattaatttacatataaacaacagaagatatcatggag |
316 |
Q |
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| T |
31655338 |
tctttttctctcttcatatccatcattatttaacctatagttcctagttatagcaaattgatgattaatttacatataaacaacagaagatatcatggag |
31655437 |
T |
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| Q |
317 |
aatcagcttttgcttcctacaaattacggtaaaaatgcaatggaagaagagctaataagaggacgtgagatggcaaatcaattacttgaagtattaactt |
416 |
Q |
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| T |
31655438 |
aatcagcttttgcttcctacaaattacggtaaaaaggcaatggaagaagagctaataagaggacgtgacatggcaaatcaattacttgaagtattaactt |
31655537 |
T |
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| Q |
417 |
ttgatgataagtcaaatattagagaagttaaagggtcaaatatt |
460 |
Q |
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| T |
31655538 |
ttgatgataagtcaaatattagagaagttaaagggtcaaatatt |
31655581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 31 - 456
Target Start/End: Original strand, 31648131 - 31648557
Alignment:
| Q |
31 |
ttgagaaatttcttacta-cacgtacttatgttacatcgaaattacatatcttgtgtgcccttcacgcacccctttggcctgtgtgaaatgaaactgatc |
129 |
Q |
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| T |
31648131 |
ttgataaatttcttactaacacgtagttaattcacattgaaatttcgtatgttgtgtgttcttcacacacgt-tttggtctgtgtgaaatgaacctga-c |
31648228 |
T |
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| Q |
130 |
gatgaacttttgtctaaatactccaaaatgggtacaaattttaaatttgcaagttggaag--taccaagttgaataaaaggtcgtgcacctctttttctc |
227 |
Q |
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| T |
31648229 |
taggaacttttgtctatatacttccaaatgggaacagtttttaaatttgcaagtaggaaggttaacaagttgaataaaaggccatatccctccttttc-c |
31648327 |
T |
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| Q |
228 |
tcttcatatccatca-----ttatttaaccta--tagtt-ctagttatagcaaattgatgattaatttacatataaacaacagaagatatcatggagaat |
319 |
Q |
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| T |
31648328 |
tcttcatatccattaataccttatttagcctagctagttactagttatag-aaggtgttaattaatttaca------ctaccaaaaatataatggagaat |
31648420 |
T |
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| Q |
320 |
cagcttttgcttcctacaaattacggtaaaaatgcaatggaagaagagctaataagaggacgtgagatggcaaatcaattacttgaagtattaacttttg |
419 |
Q |
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| T |
31648421 |
atgctttggcttccaacaaattatggcaaaaaggcaatggaagatgaacttataagaggacgtgacatggcaaatcaattacttgaagtattaacttttg |
31648520 |
T |
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| Q |
420 |
atgataagtcaaatattagagaagttaaagggtcaaa |
456 |
Q |
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| T |
31648521 |
atgataagtcaaatattagagaagttaaagggtcaaa |
31648557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 311 - 457
Target Start/End: Complemental strand, 31663153 - 31663013
Alignment:
| Q |
311 |
atggagaatcagcttttgcttcctacaaattacggtaaaaatgcaatggaagaagagctaataagaggacgtgagatggcaaatcaattacttgaagtat |
410 |
Q |
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| T |
31663153 |
atggagaatctgctttggcttccaacaaatgac---aagaaggcaatggaagatgagcttataagaggacgtgacatggcaaatcaattacttgaggcac |
31663057 |
T |
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| Q |
411 |
taacttttgatgataagtcaaatattagagaagttaaagggtcaaat |
457 |
Q |
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| T |
31663056 |
tgacttatgatgataagtcaaatat---agaagtgaaagggtcaaat |
31663013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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