View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20384_high_54 (Length: 459)

Name: NF20384_high_54
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20384_high_54
NF20384_high_54
[»] chr3 (3 HSPs)
chr3 (130-347)||(20671478-20671694)
chr3 (46-150)||(20671718-20671822)
chr3 (397-446)||(20670456-20670505)
[»] chr4 (2 HSPs)
chr4 (51-133)||(4592683-4592765)
chr4 (222-270)||(46779143-46779191)
[»] chr2 (4 HSPs)
chr2 (49-131)||(39060309-39060391)
chr2 (218-266)||(7792291-7792339)
chr2 (51-125)||(40413071-40413145)
chr2 (49-97)||(13140626-13140674)
[»] chr1 (2 HSPs)
chr1 (49-133)||(35795644-35795728)
chr1 (48-123)||(18519627-18519702)
[»] chr8 (2 HSPs)
chr8 (232-282)||(2666184-2666234)
chr8 (49-97)||(21445986-21446034)
[»] chr7 (2 HSPs)
chr7 (225-275)||(955974-956024)
chr7 (221-270)||(41860264-41860313)
[»] chr5 (2 HSPs)
chr5 (208-250)||(40027757-40027799)
chr5 (233-270)||(31305904-31305941)
[»] chr6 (2 HSPs)
chr6 (217-270)||(6470618-6470671)
chr6 (222-282)||(14169552-14169612)
[»] scaffold0015 (1 HSPs)
scaffold0015 (49-97)||(47439-47487)


Alignment Details
Target: chr3 (Bit Score: 97; Significance: 2e-47; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 130 - 347
Target Start/End: Complemental strand, 20671694 - 20671478
Alignment:
Q  130 tatgacccgtatgcttctcgattccgcattttttgtcaaaactatgacccatatgcttctcgattatgtcannnnnnngtgatcggaattcaaaccccaa 229  Q
    ||||||| ||||||||||||||| |||||||||||||||| |||||||||  |||||||||||||||||||       ||| || |  ||| |||||| |    
T  20671694 tatgacctgtatgcttctcgattgcgcattttttgtcaaagctatgacccgcatgcttctcgattatgtcatctttttgtggtcagg-ttcgaaccccga 20671596  T
Q  230 attttacatatattacgcattctctttatcaattgagttaatgtcacgatgacacttctcaattatgtctaaattaggttaaataataatgtcaagaaaa 329  Q
    ||||| |||||||||| |||| ||  ||  || |||  || ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  20671595 attttgcatatattacacattatccctactaactgatctactgtcacgattacacttctcgattatgtctaaattaggttaaataataatgtcaagaaaa 20671496  T
Q  330 tggtaaaattatgtttaa 347  Q
    ||||||||||||||||||    
T  20671495 tggtaaaattatgtttaa 20671478  T

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Target: chr3; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 46 - 150
Target Start/End: Complemental strand, 20671822 - 20671718
Alignment:
Q  46 gatttaattgcatgtttggtcacttacgtttatttcagactttaagttggtctcaaacgattaaaaagttttaagttggttccttatgacccgtatgctt 145  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  20671822 gatttaattgcatgtttgatcacttacgtttatttcagactttaagttggtctcaaatgattaaaaagttttaagttggttccttatgacccgtatgctt 20671723  T
Q  146 ctcga 150  Q
    |||||    
T  20671722 ctcga 20671718  T

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Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 397 - 446
Target Start/End: Complemental strand, 20670505 - 20670456
Alignment:
Q  397 actcaaatcttatttttatagattaaaatccgtgttctttatatacagaa 446  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20670505 actcaaatcttatttttatagattaaaatccgtgttctttatatacagaa 20670456  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 51 - 133
Target Start/End: Complemental strand, 4592765 - 4592683
Alignment:
Q  51 aattgcatgtttggtcacttacgtttatttcagactttaagttggtctcaaacgattaaaaagttttaagttggttccttatg 133  Q
    |||||||||||||||| |||| |||||||| ||  ||||||||||||||  | | || ||||||||||||||||| |||||||    
T  4592765 aattgcatgtttggtcccttatgtttattttaggttttaagttggtctcttatgttttaaaagttttaagttggtcccttatg 4592683  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 270
Target Start/End: Complemental strand, 46779191 - 46779143
Alignment:
Q  222 aaccccaaattttacatatattacgcattctctttatcaattgagttaa 270  Q
    |||||||||| |||||||||||||||||| |   |||||||||||||||    
T  46779191 aaccccaaatcttacatatattacgcattattcctatcaattgagttaa 46779143  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 131
Target Start/End: Original strand, 39060309 - 39060391
Alignment:
Q  49 ttaattgcatgtttggtcacttacgtttatttcagactttaagttggtctcaaacgattaaaaagttttaagttggttcctta 131  Q
    ||||||||||||||| || |||| |||||||| ||  |||||||||||| | || | || ||||||||||||||||| |||||    
T  39060309 ttaattgcatgtttgatcccttatgtttattttagtttttaagttggtccctaatgttttaaaagttttaagttggtccctta 39060391  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 218 - 266
Target Start/End: Complemental strand, 7792339 - 7792291
Alignment:
Q  218 ttcaaaccccaaattttacatatattacgcattctctttatcaattgag 266  Q
    |||||||| || ||||||||||||||| ||||| |||||||||||||||    
T  7792339 ttcaaacctcagattttacatatattatgcattgtctttatcaattgag 7792291  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 51 - 125
Target Start/End: Original strand, 40413071 - 40413145
Alignment:
Q  51 aattgcatgtttggtcacttacgtttatttcagactttaagttggtctcaaacgattaaaaagttttaagttggt 125  Q
    |||||||||||| ||| ||||||||||||| ||| ||||| ||| | ||| ||  ||||||||| ||||||||||    
T  40413071 aattgcatgtttagtctcttacgtttattttagattttaaattgatttcatacatttaaaaagtattaagttggt 40413145  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 13140674 - 13140626
Alignment:
Q  49 ttaattgcatgtttggtcacttacgtttatttcagactttaagttggtc 97  Q
    |||||||||||||||||| |||  |||||||| ||| ||||||||||||    
T  13140674 ttaattgcatgtttggtcccttgtgtttattttagattttaagttggtc 13140626  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 49 - 133
Target Start/End: Complemental strand, 35795728 - 35795644
Alignment:
Q  49 ttaattgcatgtttggtcacttacgtttatttcagactttaagttggtctcaaacgattaaaaagttttaagttggttccttatg 133  Q
    ||||||||||||||||||  ||| |||||||| ||| |||||||||||| |  | | || ||||||||||| ||||| |||||||    
T  35795728 ttaattgcatgtttggtcctttatgtttattttagattttaagttggtccctgatgttttaaaagttttaaattggtcccttatg 35795644  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 123
Target Start/End: Complemental strand, 18519702 - 18519627
Alignment:
Q  48 tttaattgcatgtttggtcacttacgtttatttcagactttaagttggtctcaaacgattaaaaagttttaagttg 123  Q
    |||||||||||||||| || |||| |||||||| ||  || |||||||||||| ||| || |||||||| ||||||    
T  18519702 tttaattgcatgtttgatctcttatgtttattttagttttcaagttggtctcatacgttttaaaagtttcaagttg 18519627  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 232 - 282
Target Start/End: Original strand, 2666184 - 2666234
Alignment:
Q  232 tttacatatattacgcattctctttatcaattgagttaatgtcacgatgac 282  Q
    ||||||||||||||||||| |||||||||| |||| |||  ||||||||||    
T  2666184 tttacatatattacgcattgtctttatcaactgagctaagttcacgatgac 2666234  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 21445986 - 21446034
Alignment:
Q  49 ttaattgcatgtttggtcacttacgtttatttcagactttaagttggtc 97  Q
    |||||||||||||||||| ||||  ||||||| ||| ||||||||||||    
T  21445986 ttaattgcatgtttggtcccttatatttattttagattttaagttggtc 21446034  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 225 - 275
Target Start/End: Original strand, 955974 - 956024
Alignment:
Q  225 cccaaattttacatatattacgcattctctttatcaattgagttaatgtca 275  Q
    |||||||||||||||||||| ||||| ||| |||||| |||| ||||||||    
T  955974 cccaaattttacatatattatgcattgtctctatcaaatgagctaatgtca 956024  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 270
Target Start/End: Original strand, 41860264 - 41860313
Alignment:
Q  221 aaaccccaaattttacatatattacgcattctctttatcaattgagttaa 270  Q
    ||||||||||| ||| |||||||| ||||| |||||||||||| ||||||    
T  41860264 aaaccccaaatcttatatatattatgcattgtctttatcaattaagttaa 41860313  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 208 - 250
Target Start/End: Original strand, 40027757 - 40027799
Alignment:
Q  208 gtgatcggaattcaaaccccaaattttacatatattacgcatt 250  Q
    ||||||||| |||||||||| |||||||||||||||| |||||    
T  40027757 gtgatcggagttcaaaccccgaattttacatatattatgcatt 40027799  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 270
Target Start/End: Original strand, 31305904 - 31305941
Alignment:
Q  233 ttacatatattacgcattctctttatcaattgagttaa 270  Q
    |||||||||||| ||||| |||||||||||||||||||    
T  31305904 ttacatatattatgcattgtctttatcaattgagttaa 31305941  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 270
Target Start/End: Original strand, 6470618 - 6470671
Alignment:
Q  217 attcaaaccccaaattttacatatattacgcattctctttatcaattgagttaa 270  Q
    ||||||||||| ||  |||||||||||| ||||| |||||||||| ||||||||    
T  6470618 attcaaaccccgaaacttacatatattatgcattgtctttatcaactgagttaa 6470671  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 282
Target Start/End: Original strand, 14169552 - 14169612
Alignment:
Q  222 aaccccaaattttacatatattacgcattctctttatcaattgagttaatgtcacgatgac 282  Q
    |||||||||| || ||||||||  ||||| || ||||||| |||||||| |||||||||||    
T  14169552 aaccccaaatcttgcatatattctgcattgtccttatcaactgagttaaggtcacgatgac 14169612  T

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Target: scaffold0015 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 47487 - 47439
Alignment:
Q  49 ttaattgcatgtttggtcacttacgtttatttcagactttaagttggtc 97  Q
    |||||||||||||||||| |||| |||||||| ||  ||||||||||||    
T  47487 ttaattgcatgtttggtcccttatgtttattttaggttttaagttggtc 47439  T

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