View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_high_55 (Length: 458)
Name: NF20384_high_55
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_high_55 |
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Alignment Details
Target: chr3 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 5 - 443
Target Start/End: Original strand, 42524061 - 42524499
Alignment:
| Q |
5 |
gatgtcgaagaatatcgatggtcagagttgatgagatgcggtggaggacagtggatgagctgttccgcatgagtgccgcattggcagacacctaaatgct |
104 |
Q |
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| T |
42524061 |
gatgtggaacaagatcgatggtcagagttgatgagatgcggtggaggacagtggatgagctcttccgcatgggtaccgcattggcagacacctaaatgct |
42524160 |
T |
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| Q |
105 |
caagttagtttttgagtgagatgggtgagaagtttaatacgatagaaattgtaactttctcctgttgaagttttaggataattaatgtagggtaaatttc |
204 |
Q |
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| T |
42524161 |
caagtcagtttttgagtgagatgagtgagaagtttaatacgatagaaattgtaactttctcctgttgaagttttaggataattaatgtagcgtaaatttc |
42524260 |
T |
|
| Q |
205 |
gttgaaaccattgagagatcagcgtgatttacggataagtgcttggtcatacattgattggttgataccgtagagtgtgttggcaatgcaacttaatgtg |
304 |
Q |
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|| || |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
42524261 |
gtagagaccattgagagatcagcgtgatttacggataagtgcctggtcagacattgattggttgataccctagagtgtgttggcaatgcaacttaatgtg |
42524360 |
T |
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| Q |
305 |
tggctctatagtagagtccgcgcgctaaggattgaacatggtacagtccggaataataatcattaatctgtagactatgtatagtctacaaccgtaaaaa |
404 |
Q |
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| T |
42524361 |
tggctctatagtagagtccgtgcgctaaggattgaacatggtccagtccggaacaataatcatcaatctgtagactatgtatagtctactaccgtaaaaa |
42524460 |
T |
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| Q |
405 |
ttatgttcgaaatttgaacatcaaattcatccattaacc |
443 |
Q |
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| T |
42524461 |
ttatgttcgaaatttgaacatcaaattcatccattaacc |
42524499 |
T |
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