View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20384_high_56 (Length: 458)
Name: NF20384_high_56
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_high_56 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 1 - 443
Target Start/End: Complemental strand, 40326108 - 40325666
Alignment:
| Q |
1 |
atgaacatatgaaagaaaactctgatgtagtatttcaggttgcagtctctggctttttaaaacttgctgccaatattacctagaaatcttatttgttaag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
40326108 |
atgaacatatgaaagaaaactctgatgtagtatttcaggttgcagtctctggctttttaaaacttgctgccgatattacctagaaatcttatttgttaag |
40326009 |
T |
|
| Q |
101 |
gtcctatttagaaaattagaactattttttacaccaattttgtgttaacagaacttgtttttgcaggtttcaagatccataggtgatgcatatctgaaga |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40326008 |
gtcctatgtagaaaattagaactattttttacaccaattttgtgttaacagaacttgtttttgcaggtttcaagatccataggtgatgcatatctgaaga |
40325909 |
T |
|
| Q |
201 |
aagcagaatttaacagagagcctctgccacagaagtttagactgcctgaaacctttttcaagccaattctcagtagtgagccatcaatatcagttcataa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40325908 |
aagcagaatttaacagagagcctctgccacagaagtttagactgcctgaaacctttttcaagccaattctcagtagtgagccatcaatatcagttcataa |
40325809 |
T |
|
| Q |
301 |
aatccaacctgaagatcaatttctcatctttgcttctgatggtttatgggagcatcttagcaaccaagtagctgtgaatatcgttagcaacaatccacgc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40325808 |
aatccaacctgaagatcaatttctcatctttgcttctgatggtttatgggagcatcttagcaaccaagtagctgtgaatatcgttagcaacaatccacgc |
40325709 |
T |
|
| Q |
401 |
aatgtaagcttcgtttctgtcaaaattcaaggatgttttattt |
443 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40325708 |
aatgtaagcttcgtttctgtcaaaattcaaggatgttttattt |
40325666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 93; Significance: 4e-45; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 158 - 398
Target Start/End: Complemental strand, 28938648 - 28938408
Alignment:
| Q |
158 |
tttttgcaggtttcaagatccataggtgatgcatatctgaagaaagcagaatttaacagagagcctctgccacagaagtttagactgcctgaaacctttt |
257 |
Q |
| |
|
|||||||||||||| |||| || ||||||||||||||||||||||||||||| || || |||||||| ||| ||||| ||||| ||||||| |||| |
|
|
| T |
28938648 |
tttttgcaggtttcgcgatcgatcggtgatgcatatctgaagaaagcagaattcaatagggagcctctaccatcaaagttcagactcgctgaaacatttt |
28938549 |
T |
|
| Q |
258 |
tcaagccaattctcagtagtgagccatcaatatcagttcataaaatccaacctgaagatcaatttctcatctttgcttctgatggtttatgggagcatct |
357 |
Q |
| |
|
|||| ||||||||||| ||||||||||||| ||| |||||| | || ||||| || ||||||||||| |||||||| ||||| ||||||||||| || |
|
|
| T |
28938548 |
tcaaaccaattctcagctgtgagccatcaatttcaacacataaacttcatcctgatgaccaatttctcatatttgcttcggatggattatgggagcagct |
28938449 |
T |
|
| Q |
358 |
tagcaaccaagtagctgtgaatatcgttagcaacaatccac |
398 |
Q |
| |
|
||||||||||| ||||| || || || ||||||||||||| |
|
|
| T |
28938448 |
tagcaaccaagaggctgttaacatagtcagcaacaatccac |
28938408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University