View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_high_60 (Length: 446)
Name: NF20384_high_60
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_high_60 |
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Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 112 - 436
Target Start/End: Complemental strand, 6731137 - 6730813
Alignment:
| Q |
112 |
tagtactatggaggaggaagaaacttggtactattgttctaattgcggcaacagcaacatgggtgtcgatggaagtttatcaatttaactttctcactct |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||| || |
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| T |
6731137 |
tagtactatggaggaggaagaaacttggtactattgttcttattgcggcaacagcaacatgggtgtcgatggaagtttatcaatttaaattcctcaccct |
6731038 |
T |
|
| Q |
212 |
catctcatggctcactatatttgttgttacttcaatattcctctattccaatatgcttacacttttcggcaagtgagcaccttctccttcatctacttct |
311 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |
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| T |
6731037 |
catctcatggatcactatatttgttgttacttcaatattcctctattccaatatgcttacatttttcggcaagtgagcaccttctccttcctctacttct |
6730938 |
T |
|
| Q |
312 |
aatgcaaattactctatttttccattatgtagactaacacggatacgtaggtactaataataatctgagaaaattgaattgattaaatttaactatatgt |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
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| T |
6730937 |
aatgcaaattactctatttttccattatgtagactaacacggatacgcaggtactaataatattctgagaaaattgaagtgattaaatttaactatatgt |
6730838 |
T |
|
| Q |
412 |
atcaatgtttcgtatatgagtatta |
436 |
Q |
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|||||||| |||||||||||||||| |
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| T |
6730837 |
atcaatgtctcgtatatgagtatta |
6730813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 20 - 339
Target Start/End: Complemental strand, 6785998 - 6785676
Alignment:
| Q |
20 |
aacaacagaaacaaaacctttctcaactccctcccattcatcgggtaattattttgtgtcgcaagacagtggcaatgacataatgaatgacatagtacta |
119 |
Q |
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|||| ||||||||||||||||| |||||||||| ||| | || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6785998 |
aacagcagaaacaaaacctttcacaactccctctcatacttcaggtaataattttgtgtcgcaagacagtggcaatgacataatgaatgacatagtacta |
6785899 |
T |
|
| Q |
120 |
tggaggaggaagaaacttggtactattgttctaattgcggcaacagcaacatgggtgtcgatggaagtttatcaatttaactttctcactctcatctcat |
219 |
Q |
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|||||||||||||||||| || ||||||||||||||| ||||||| || ||||| ||| | ||||||||| |||||||||||| |||||||||||||||| |
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| T |
6785898 |
tggaggaggaagaaacttagtgctattgttctaattgtggcaacatcatcatggatgttgttggaagtttgtcaatttaacttcctcactctcatctcat |
6785799 |
T |
|
| Q |
220 |
ggctcactatatttgttgttacttcaatattcctctattccaatatgcttacacttttcggcaagtgagcaccttctccttcatcta---cttctaatgc |
316 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
6785798 |
ggctcgctatatttgttgttacttcaatattcctctattccaatatgcttacatttttcggcaagtgagcaccttctccttcctctacttcttctaatgc |
6785699 |
T |
|
| Q |
317 |
aaattactctatttttccattat |
339 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
6785698 |
aaattactctatttttccattat |
6785676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 112 - 339
Target Start/End: Complemental strand, 6728070 - 6727843
Alignment:
| Q |
112 |
tagtactatggaggaggaagaaacttggtactattgttctaattgcggcaacagcaacatgggtgtcgatggaagtttatcaatttaactttctcactct |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6728070 |
tagtactatggaggaggaagaaacttggtactattgttctaattgcggcaacaacaacatgggtgtcgatggaagtttatcaatttaactttctcactct |
6727971 |
T |
|
| Q |
212 |
catctcatggctcactatatttgttgttacttcaatattcctctattccaatatgcttacacttttcggcaagtgagcaccttctccttcatctacttct |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
6727970 |
catctcatggctcactatatttgttgttacttcaatattcctctattccaatatgcttacacttttcggcaagtgagcaccttctccttcctctacttct |
6727871 |
T |
|
| Q |
312 |
aatgcaaattactctatttttccattat |
339 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
6727870 |
aatgcaaattactctatttttccattat |
6727843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 24 - 343
Target Start/End: Complemental strand, 6760959 - 6760633
Alignment:
| Q |
24 |
acagaaacaaaacctttctcaactccctcccattcatcgggtaattattttgtgtcgcaagacagtggcaatgacataatgaatgaca--tagta--cta |
119 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| || ||||| |||||||| ||||||| ||||||||| ||| |||| ||| ||||| ||| |
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| T |
6760959 |
acagaaacaaaacctttctcaactccctctcattcttcatgtaataattttgtggcgcaagatggtggcaatggcatgttgaaggacgcgtagtatacta |
6760860 |
T |
|
| Q |
120 |
tggaggaggaagaaacttggtactattgttctaattgcggcaacagcaacatgggtgtcgatggaagtttatcaatttaactttctcactctcatctcat |
219 |
Q |
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|||||||||||||||||| |||||||||||||||||| ||||||| || ||||| ||| | ||||||||| |||||||||||| |||||||||||||||| |
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| T |
6760859 |
tggaggaggaagaaacttagtactattgttctaattgtggcaacatcatcatggatgttgttggaagtttgtcaatttaacttcctcactctcatctcat |
6760760 |
T |
|
| Q |
220 |
ggctcactatatttgttgttacttcaatattcctctattccaatatgcttacacttttcggcaagtgagcaccttctccttcatcta---cttctaatgc |
316 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
6760759 |
ggctcgctatatttgttgttacttcaatattcctctattccaatatgcttacacttttcggcaagtgagcaccttctccttcctctacttcttctaatgc |
6760660 |
T |
|
| Q |
317 |
aaattactctatttttccattatgtag |
343 |
Q |
| |
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| ||| ||||||||||| ||||||||| |
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| T |
6760659 |
atatttctctatttttctattatgtag |
6760633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 24 - 105
Target Start/End: Complemental strand, 6731309 - 6731228
Alignment:
| Q |
24 |
acagaaacaaaacctttctcaactccctcccattcatcgggtaattattttgtgtcgcaagacagtggcaatgacataatga |
105 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| | ||||||||||||| |||| |
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| T |
6731309 |
acagaaacaaaacctttctcaactccctctcattcatcgggtaattattttgtggcgcaaaatggtggcaatgacatcatga |
6731228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 343 - 435
Target Start/End: Complemental strand, 6760574 - 6760482
Alignment:
| Q |
343 |
gactaacacggatacgtaggtactaataataatctgagaaaattgaattgattaaatttaactatatgtatcaatgtttcgtatatgagtatt |
435 |
Q |
| |
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|||| ||||||||||||| | |||||||||||| |||||||||| || ||||||||| |||||||| |||||||| | ||||||||||||||| |
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|
| T |
6760574 |
gactgacacggatacgtatgcactaataataatttgagaaaatttaagtgattaaatgtaactataggtatcaatatctcgtatatgagtatt |
6760482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 404
Target Start/End: Original strand, 34369550 - 34369586
Alignment:
| Q |
368 |
ataataatctgagaaaattgaattgattaaatttaac |
404 |
Q |
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|||||||| ||||||||||||||||||||||| |||| |
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| T |
34369550 |
ataataatttgagaaaattgaattgattaaatataac |
34369586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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