View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_high_61 (Length: 443)
Name: NF20384_high_61
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_high_61 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 12 - 285
Target Start/End: Original strand, 15155108 - 15155382
Alignment:
| Q |
12 |
ataataataattgatcagttcatacaatnnnnnnntgctactttttcttcaaataaatagggtttagcacttggtcagttatnnnnnnn-gccttcttaa |
110 |
Q |
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| T |
15155108 |
ataataataattgatcagttcatacaataaaaaaatgctactttttcttcaaataaatagggtttagcacttggtcagttataaaaaaaagccttcttaa |
15155207 |
T |
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| Q |
111 |
attagactagatattaaatgtctcttaaataagtcaatgtgttaatatgttgattaatctatgacatttttgagggcatcgaagattagatgcaaaaatg |
210 |
Q |
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| T |
15155208 |
attagactagatattaaatgtctcttaaataagccaatgtgttaatgtgttgattaatctatgacattttggtgggcatcgaagattagatgcaaaaatg |
15155307 |
T |
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| Q |
211 |
ttattcgatggtgtagttgggacaaattggctatgataaaggtgtggggaggcatggtattttggcatatctatg |
285 |
Q |
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| T |
15155308 |
ttattcgatggtgtagttgggacaaattggctatgataaaggtgtggggagggatggtattttggcatatctatg |
15155382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 331 - 428
Target Start/End: Original strand, 15155447 - 15155544
Alignment:
| Q |
331 |
agaaaagatagtttcggccgcgtcaatccataggaggttccgaagaccctccgacagtgatgcatggtggcaaaagtcaatatccaaggatgatgagt |
428 |
Q |
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| T |
15155447 |
agaaaagatagttttggccgcgtcaatccataggagattccgaagaccctccgacagtgatgcatgatggcaaaagtcaatatgcaaagatgatgagt |
15155544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 301 - 338
Target Start/End: Original strand, 15155394 - 15155431
Alignment:
| Q |
301 |
atacaaagctaaaattaaacaatagcaaaaagaaaaga |
338 |
Q |
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| T |
15155394 |
atacaaagctaaaattaaacaacagcaaaaagaaaaga |
15155431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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