View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_high_62 (Length: 443)
Name: NF20384_high_62
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_high_62 |
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Alignment Details
Target: chr1 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 19 - 433
Target Start/End: Original strand, 5440541 - 5440956
Alignment:
| Q |
19 |
gttgtaccatgatcttttacaagctgaatttccattgatgccttcattttttgcataacataaataaataaaaccaatagtgatatggacaacatgatta |
118 |
Q |
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| T |
5440541 |
gttgtaccatgatcttttacaagctgaatttccattgatgccttcattttttgcataacataaataaataaaaccaatagtgatatggacaacatgacta |
5440640 |
T |
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| Q |
119 |
atggtagatatacaacataataacttaatattattttttgaaggatttcaaatagtagcaagaatctac-agtgaagagaattttaaaatttctatagtt |
217 |
Q |
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| T |
5440641 |
atggtagatatacaacataataacttaatattattttttgaaggatttcaaatagtagcaagaatctacgaatgaagagaattttaaaatttctatagtt |
5440740 |
T |
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| Q |
218 |
gctcatatagtcttatgttgtcaatatgtatgaagatcataaaacaatttaagcatgccaacattatgcatgagcatacaaaagatggtgatacatagtt |
317 |
Q |
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| T |
5440741 |
gctcatatagtcttatgttgtcaatatgtatgaagatcataaaacaatttcagcatgccaacattatgcatgagcatacaaaagatggtgatacatagtt |
5440840 |
T |
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| Q |
318 |
gaatgacatgatttaatttttgtcggtatctatgatagataaataaattgtaccagtttttgttcttggtaaccagtcatctgcgaatatgttttttgaa |
417 |
Q |
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| T |
5440841 |
gaatgacatgatttaatttttgtcggtatctacgatagataaataaattgtaccagtttttgttcttggtaaccagtcatctgcgaatatgttttttgaa |
5440940 |
T |
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| Q |
418 |
aagcttttagttcttc |
433 |
Q |
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| T |
5440941 |
aagcttttagttcttc |
5440956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 360 - 433
Target Start/End: Complemental strand, 3856976 - 3856903
Alignment:
| Q |
360 |
ataaattgtaccagtttttgttcttggtaaccagtcatctgcgaatatgttttttgaaaagcttttagttcttc |
433 |
Q |
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| T |
3856976 |
ataaattgtaccagtttttgttctaggtgaccattcttctgggagtgtgttttctgaaaagctttcagttcttc |
3856903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 360 - 433
Target Start/End: Complemental strand, 3865733 - 3865660
Alignment:
| Q |
360 |
ataaattgtaccagtttttgttcttggtaaccagtcatctgcgaatatgttttttgaaaagcttttagttcttc |
433 |
Q |
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| T |
3865733 |
ataaattgtaccagtttttgttctaggtgaccattcttctgggagtgtgttttctgaaaagctttcagttcttc |
3865660 |
T |
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