View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20384_high_65 (Length: 436)

Name: NF20384_high_65
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20384_high_65
NF20384_high_65
[»] chr7 (4 HSPs)
chr7 (115-363)||(14049213-14049456)
chr7 (115-363)||(14359242-14359485)
chr7 (46-105)||(14049130-14049187)
chr7 (46-105)||(14359159-14359216)


Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 115 - 363
Target Start/End: Original strand, 14049213 - 14049456
Alignment:
Q  115 gttataagtagaaaaactcatgtagtagataattgtgctaatgagaacgttgaaggacatctagggagaatgcatcttaagaaacaatgaagtcatagtt 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  14049213 gttataagtagaaaaactcatgtagtagataattgtgctaatgagaacgttgaaggacatctagggagaatgcatcttcagaaacaatgaagtcatagtt 14049312  T
Q  215 ttggattttcaaaataacttatgtagttgaatttgtattagttggatctatattcttagctatcatatttatctgctgaagtgaaaaccaaaacataaaa 314  Q
    |||||||||||||||||||||     ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14049313 ttggattttcaaaataactta-----ttgaatttgcattagttggatctatattcttagctatcatatttatctgctgaagtgaaaaccaaaacagaaaa 14049407  T
Q  315 catgaaaagtaaaggtgtactttctacagttgtgtatctctgctcctcc 363  Q
    ||||||||||||||| |||||||||||||||||||||||| | ||||||    
T  14049408 catgaaaagtaaaggcgtactttctacagttgtgtatctcaggtcctcc 14049456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 115 - 363
Target Start/End: Original strand, 14359242 - 14359485
Alignment:
Q  115 gttataagtagaaaaactcatgtagtagataattgtgctaatgagaacgttgaaggacatctagggagaatgcatcttaagaaacaatgaagtcatagtt 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  14359242 gttataagtagaaaaactcatgtagtagataattgtgctaatgagaacgttgaaggacatctagggagaatgcatcttcagaaacaatgaagtcatagtt 14359341  T
Q  215 ttggattttcaaaataacttatgtagttgaatttgtattagttggatctatattcttagctatcatatttatctgctgaagtgaaaaccaaaacataaaa 314  Q
    |||||||||||||||||||||     ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14359342 ttggattttcaaaataactta-----ttgaatttgcattagttggatctatattcttagctatcatatttatctgctgaagtgaaaaccaaaacagaaaa 14359436  T
Q  315 catgaaaagtaaaggtgtactttctacagttgtgtatctctgctcctcc 363  Q
    ||||||||||||||| |||||||||||||||||||||||| | ||||||    
T  14359437 catgaaaagtaaaggcgtactttctacagttgtgtatctcaggtcctcc 14359485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 46 - 105
Target Start/End: Original strand, 14049130 - 14049187
Alignment:
Q  46 aactctgtatttggagaattcatgcacttaggctgctgcttatttacaaaaagaaaataa 105  Q
    |||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||    
T  14049130 aactctgtatttggagaattcatgcacttaggc--atgcttatttacaaaaagaaaataa 14049187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 46 - 105
Target Start/End: Original strand, 14359159 - 14359216
Alignment:
Q  46 aactctgtatttggagaattcatgcacttaggctgctgcttatttacaaaaagaaaataa 105  Q
    |||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||    
T  14359159 aactctgtatttggagaattcatgcacttaggc--atgcttatttacaaaaagaaaataa 14359216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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