View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_high_66 (Length: 435)
Name: NF20384_high_66
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_high_66 |
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Alignment Details
Target: chr2 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 27 - 426
Target Start/End: Complemental strand, 36570963 - 36570564
Alignment:
| Q |
27 |
atgtagtttgatgtcacatgtaatgaccattccttatataggaaataattgtttactatcccttagtagtttgcatttatgagtaccaaaaatgcgtagt |
126 |
Q |
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| T |
36570963 |
atgtagtttgatgtcacatgtaatgaccattccttatataggaaataattgtttactatcccttagtagtttgcatttatgagtaccaaaaatgcgtagt |
36570864 |
T |
|
| Q |
127 |
agagtnnnnnnngatatgtaactgaaatcagtgacaaaaaattctccaatcctctgctatggattcgatgcatttctatgattaaattattcgtatgtgt |
226 |
Q |
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| T |
36570863 |
agagtaaaaaaagatatgtaactgaaatcagtgacaaaaaattctccaaccctctgctatggattcgatgcatttctatgattaaattattcgtatgtgt |
36570764 |
T |
|
| Q |
227 |
ttaatttttgtcctgtggatggaaacattctacgaacacttttcatgcgattcatgccatttaaggaattgaggaattttgtgaacaagtgacttcctct |
326 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36570763 |
ttaatttttgtcctgtggatggaaacattctacgaacacttttcatgcgattcatgccatttaaggaattgaggaattttgtgaacaagtgacttcctct |
36570664 |
T |
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| Q |
327 |
actgttctatagtatgagtgtatgtatgccatattctcctgtactttgttcttgttttgttaaccatttttacattaacgaaaatacccactcttcatct |
426 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36570663 |
actgttctatagtatgagtgtatgtatgccatattctcctgtactttgttcttgttttgttaaccatttttacattaacgaaaatacccactcttcatct |
36570564 |
T |
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