View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_high_70 (Length: 425)
Name: NF20384_high_70
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_high_70 |
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Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 18 - 321
Target Start/End: Original strand, 22607572 - 22607875
Alignment:
| Q |
18 |
atctaggttcaaaatataatattnnnnnnngaaaagtactaatacaaatcaatacgcaatcctcttctttaagatacattaagattttccttcacttctc |
117 |
Q |
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| T |
22607572 |
atctaggttcaaaatataatattaataaaagaaaagtactaatacaaatcaatacgcaatcctcttctttaagatacattaagattttccttcacttctc |
22607671 |
T |
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| Q |
118 |
ataaatcttctgattcttctctcttggttttgctgctttggttaagacagaaacaagaacctctcttacattatgtgtgttatgttttagtacacaaaca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22607672 |
ataaatcttctgattcttctctcttggttttgctgctttggtaaagacagaaacaagaacctctcttacattatgtgtgttatgttttagtacacaaaca |
22607771 |
T |
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| Q |
218 |
ttcttaacacacattatcaatagttatgcaaagtttcaaaacagctcaatcaaactctcaactctattgccaccaacccttcttgcttaggtatgtttgt |
317 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22607772 |
ttcttaacacacattatcaatagttatgcaaagcttcaaaacagctcaatcaaactctcaactctattgccaccaacccttcttgcttaggtatgtttgt |
22607871 |
T |
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| Q |
318 |
gtag |
321 |
Q |
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|||| |
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| T |
22607872 |
gtag |
22607875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 347 - 410
Target Start/End: Original strand, 22607899 - 22607962
Alignment:
| Q |
347 |
attctcttgtgataaaaatggtttcatgctattttggttttttgatgaaacaaacagaggagaa |
410 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
22607899 |
attctcttgtgataaaaatggtttcatgctgttttggttttttgatgaaacaaacagaggagaa |
22607962 |
T |
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