View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20384_high_75 (Length: 413)
Name: NF20384_high_75
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_high_75 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 396; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 400
Target Start/End: Complemental strand, 32377790 - 32377391
Alignment:
| Q |
1 |
gcgttccgatggcttaaagtcgcgattcagtaccatgttttctcagaaacttgaacggaattcagtcaagaaaaggttcaaggaatggatcaaaaaccca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32377790 |
gcgttccgatggcttaaagtcgcgattcagtaccatgttttctcagaaacttgaacggaattcagtcaagaaaaggttcaaggaatggatcaaaaaccca |
32377691 |
T |
|
| Q |
101 |
atgaacatggcccttttcgcgtggggaatctgtgtcgctgtatcgggggagattctgttcttggtcatgacaggaatgttgaataatgtgctaaaaacaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32377690 |
atgaacatggcccttttcgcgtggggaatctgtgtcgctgtatcgggggagattctgttcttggtcatgacaggaatgttgaataatgtgctaaaaacaa |
32377591 |
T |
|
| Q |
201 |
agtctgagaggaatacatggtttgaaataagtaaccaaatactaaatgctctctttacactaatgtctttgtataatcatccaaagaggttccaccatct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32377590 |
agtctgagaggaatacatggtttgaaataagtaaccaaatactaaatgctctctttacactaatgtctttgtataatcatccaaagaggttccaccatct |
32377491 |
T |
|
| Q |
301 |
tgttcttttgtgtagatggagaccaaatgatattactacacttagaatgattttctgcaaaaatggtacttctaagcctcgtgaatgggcacatatgatg |
400 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32377490 |
tgttcttttgtgtagatggagatcaaatgatattactacacttagaatgattttctgcaaaaatggtacttctaagcctcgtgaatgggcacatatgatg |
32377391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 400
Target Start/End: Complemental strand, 32366105 - 32365706
Alignment:
| Q |
1 |
gcgttccgatggcttaaagtcgcgattcagtaccatgttttctcagaaacttgaacggaattcagtcaagaaaaggttcaaggaatggatcaaaaaccca |
100 |
Q |
| |
|
|||||| ||| || |||||||||| |||||||| |||||| |||||||||||||| |||||||||||||||||| | || |||||||||| |||||||| |
|
|
| T |
32366105 |
gcgttctgatagcctaaagtcgcgtttcagtacgatgtttgctcagaaacttgaatggaattcagtcaagaaaatatgcatggaatggatcgaaaaccca |
32366006 |
T |
|
| Q |
101 |
atgaacatggcccttttcgcgtggggaatctgtgtcgctgtatcgggggagattctgttcttggtcatgacaggaatgttgaataatgtgctaaaaacaa |
200 |
Q |
| |
|
|||||||||||||||||||||||| | | ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
32366005 |
atgaacatggcccttttcgcgtggatagtgtgtgtcgctgtatcgggagcgattctgttcttggtcatgacaggaatgttgaataatgtgctaaaaaaaa |
32365906 |
T |
|
| Q |
201 |
agtctgagaggaatacatggtttgaaataagtaaccaaatactaaatgctctctttacactaatgtctttgtataatcatccaaagaggttccaccatct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
32365905 |
agtctgagaggaatacatggtttgaaataaataaccaaatactaaatgctctctttacactaatgtgtttgtatcttcatccaaagaggttccaccatct |
32365806 |
T |
|
| Q |
301 |
tgttcttttgtgtagatggagaccaaatgatattactacacttagaatgattttctgcaaaaatggtacttctaagcctcgtgaatgggcacatatgatg |
400 |
Q |
| |
|
|||||||||||||||||||| |||||||||| || || ||||||| ||||||| ||||||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
32365805 |
tgttcttttgtgtagatggacaccaaatgatgtttctgcacttaggatgatttactgcaaaaatggtacttataagcctcatgaatgggcacatatgatg |
32365706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University