View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20384_high_82 (Length: 405)

Name: NF20384_high_82
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20384_high_82
NF20384_high_82
[»] chr3 (2 HSPs)
chr3 (92-171)||(36182821-36182900)
chr3 (74-171)||(36182758-36182855)
[»] chr8 (3 HSPs)
chr8 (74-150)||(30636134-30636210)
chr8 (2-38)||(30636230-30636266)
chr8 (139-172)||(9511748-9511781)
[»] chr7 (1 HSPs)
chr7 (323-366)||(49092403-49092446)
[»] chr4 (2 HSPs)
chr4 (92-170)||(9243022-9243100)
chr4 (139-171)||(49261890-49261922)
[»] chr2 (2 HSPs)
chr2 (92-184)||(30398425-30398517)
chr2 (92-186)||(30398171-30398265)
[»] chr1 (1 HSPs)
chr1 (135-171)||(5770664-5770700)


Alignment Details
Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 92 - 171
Target Start/End: Complemental strand, 36182900 - 36182821
Alignment:
Q  92 tgcacaaaacactcgtgccctccaaccatgtctaaaaagaccttgcatgagttaagtcatgctgcgtaacttaactcacg 171  Q
    ||||||||||||||| ||||| || ||||||| |||| |||| ||| |||||||||||| ||||||| ||||||||||||    
T  36182900 tgcacaaaacactcgcgccctacagccatgtccaaaatgaccctgcgtgagttaagtcacgctgcgtgacttaactcacg 36182821  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 171
Target Start/End: Original strand, 36182758 - 36182855
Alignment:
Q  74 gaattttactctttctcttgcacaaaacactcgtgccctccaaccatgtctaaaaagaccttgcatgagttaagtcatgctgcgtaacttaactcacg 171  Q
    ||||||| ||||| | | ||||||||||||||| |||||  | ||||||| |||| |||| ||| |||||||||||| || |||| ||||||||||||    
T  36182758 gaattttgctcttccccctgcacaaaacactcgcgccctgtagccatgtccaaaatgaccctgcgtgagttaagtcacgcagcgtgacttaactcacg 36182855  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 74 - 150
Target Start/End: Original strand, 30636134 - 30636210
Alignment:
Q  74 gaattttactctttctcttgcacaaaacactcgtgccctccaaccatgtctaaaaagaccttgcatgagttaagtca 150  Q
    ||||||| ||||||| | |||||||||||||||| || | || ||||| ||||||||||||||| ||||||||||||    
T  30636134 gaattttgctctttcccctgcacaaaacactcgtaccatgcagccatgcctaaaaagaccttgcgtgagttaagtca 30636210  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 30636266 - 30636230
Alignment:
Q  2 aaataaagaagaatggatggaggcccaaaggaaagga 38  Q
    |||||||||||||||||||||| ||||||||||||||    
T  30636266 aaataaagaagaatggatggagacccaaaggaaagga 30636230  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 172
Target Start/End: Original strand, 9511748 - 9511781
Alignment:
Q  139 tgagttaagtcatgctgcgtaacttaactcacgt 172  Q
    ||||||||||||||| ||||||||||||||||||    
T  9511748 tgagttaagtcatgcagcgtaacttaactcacgt 9511781  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 323 - 366
Target Start/End: Original strand, 49092403 - 49092446
Alignment:
Q  323 ctcttatcatcatgagcgagagtattatactcaacttggggttg 366  Q
    ||||| ||||||||||||||||||||||||||||||||||||||    
T  49092403 ctcttgtcatcatgagcgagagtattatactcaacttggggttg 49092446  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 170
Target Start/End: Complemental strand, 9243100 - 9243022
Alignment:
Q  92 tgcacaaaacactcgtgccctccaaccatgtctaaaaagaccttgcatgagttaagtcatgctgcgtaacttaactcac 170  Q
    ||||||||||||||| ||||| |||||||| |||||| | || ||| ||||||||||||  || ||| |||||||||||    
T  9243100 tgcacaaaacactcgcgccctgcaaccatgcctaaaatgcccgtgcgtgagttaagtcacactacgtgacttaactcac 9243022  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 171
Target Start/End: Original strand, 49261890 - 49261922
Alignment:
Q  139 tgagttaagtcatgctgcgtaacttaactcacg 171  Q
    |||||||||||||||||||| ||||||||||||    
T  49261890 tgagttaagtcatgctgcgtgacttaactcacg 49261922  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 184
Target Start/End: Complemental strand, 30398517 - 30398425
Alignment:
Q  92 tgcacaaaacactcgtgccctccaaccatgtctaaaaagaccttgcatgagttaagtcatgctgcgtaacttaactcacgtactttaatttta 184  Q
    ||||||||||| ||| ||||| |  |||||  ||||| |||| ||| |||||||||||||| ||||| |||||||||||  || |||||||||    
T  30398517 tgcacaaaacattcgcgccctgctgccatgcttaaaatgaccctgcgtgagttaagtcatgttgcgtgacttaactcacacaccttaatttta 30398425  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 92 - 186
Target Start/End: Original strand, 30398171 - 30398265
Alignment:
Q  92 tgcacaaaacactcgtgccctccaaccatgtctaaaaagaccttgcatgagttaagtcatgctgcgtaacttaactcacgtactttaattttaca 186  Q
    |||||||||||||||   ||| || ||||||||||||  | | ||| |||||||||||| | ||||| |||||||||||  || |||||||||||    
T  30398171 tgcacaaaacactcgcatcctgcagccatgtctaaaataatcctgcgtgagttaagtcacgatgcgtgacttaactcacacaccttaattttaca 30398265  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 5770700 - 5770664
Alignment:
Q  135 tgcatgagttaagtcatgctgcgtaacttaactcacg 171  Q
    |||||||||||||||| ||||||| ||||||||||||    
T  5770700 tgcatgagttaagtcacgctgcgtgacttaactcacg 5770664  T

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