View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20384_high_83 (Length: 404)
Name: NF20384_high_83
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_high_83 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 14 - 389
Target Start/End: Complemental strand, 42662033 - 42661670
Alignment:
| Q |
14 |
agagacgcattggtgcaaattgtcaacgtgctactccaatgacaaaagttgctgatttgatggatagttacttagctgaagtagcacctgatgtcaactt |
113 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42662033 |
agagacgcattgttggaaattgtcaacgtgctactccaatgacaaaagttgctgatttgatggatagttacttagctgaagtagcacctgatgtcaactt |
42661934 |
T |
|
| Q |
114 |
gaaatttccaaaatttcagtcacttgctgctgttattcctgattgtgctaggaccttggatgatggtatttaccgtgcaattgatatctacctcaaggtt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42661933 |
gaaatttccaaaatttcagtcacttgctgctgttattcctgattgtgctaggaccttggatgatggtatttaccgtgcaattgatatctacctcaaggtt |
42661834 |
T |
|
| Q |
214 |
gcctactttctctatatgcttaatagtaaatatgcttcaaataataagaggatcaaattaataatatttgtctcataagatttaaagagatttgtttttt |
313 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
42661833 |
gcctactttctctatatgcttaatagta--------------aataagaggatcaaattaataatatttgtctcataagatttaaagagatttg-ttttt |
42661749 |
T |
|
| Q |
314 |
catttagtacac---atgtttcattggtaatttttagacagacactaacggaaaattatgaatttcagagccatgcatg |
389 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42661748 |
catttagtacacatgatgtttcattggtaatttttagacagacactaacggaaaattatgaatttcagagccatgcatg |
42661670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University