View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_high_88 (Length: 394)
Name: NF20384_high_88
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_high_88 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 3 - 394
Target Start/End: Original strand, 28594026 - 28594416
Alignment:
| Q |
3 |
gatgtcgaagaaaatgaagagagtcttttggtgttgattgtcttcccaaattgcccttgtgctttgttgcatatttcaatataagactttgttctaaatg |
102 |
Q |
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| T |
28594026 |
gatgttgaacaagatgaagagagtcttttggtgttgattgtcttcccaaattgcccttgtgctttgttgcatatttcaatataagactttgttctaaatg |
28594125 |
T |
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| Q |
103 |
tttccagatattcttcatttacgtttggcttcttacacaagctttcttccttatcacgttgtttccgtgatctacctgcataataaatttccacaaaatc |
202 |
Q |
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| T |
28594126 |
tttccagatattcttcatttacgtttggcttcttacacaagctttcttccttatcaagttgtttccgtgatctacctgcataataaatttccacaaaatc |
28594225 |
T |
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| Q |
203 |
aatatcattaggaatataaaatcgatttaacgaaataaaatattttatatg-nnnnnnnncgaaattatctctaatttcatcactaagtgttatatcaat |
301 |
Q |
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| T |
28594226 |
aatatcattaggaatataaaatcgatttaacgaaataaaatattttatatgaaaaaaaaacgaaattatatctaatttcatcgctaagtgttatatcaac |
28594325 |
T |
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| Q |
302 |
gttaaaattaaacgattgaactatacctgatctccgaagagaacaaagccacccagaacatgtcatgtagaaaaatattgattgaaacaaaaa |
394 |
Q |
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| T |
28594326 |
gttaaaattaaacgattgaac--tacctgatctccgaagagaacaaagccacccagaacatgtcatgtagaaaaatatagattgaaacaaaaa |
28594416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 117; Significance: 2e-59; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 20 - 204
Target Start/End: Complemental strand, 8357548 - 8357364
Alignment:
| Q |
20 |
agagagtcttttggtgttgattgtcttcccaaattgcccttgtgctttgttgcatatttcaatataagactttgttctaaatgtttccagatattcttca |
119 |
Q |
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| T |
8357548 |
agagagtcttttggtgctgattgtcttctcaaattgcacttttgctttgttgcatatttcaatataagactttgttctaaatgcttcaaaatattcttca |
8357449 |
T |
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| Q |
120 |
tttacgtttggcttcttacacaagctttcttccttatcacgttgtttccgtgatctacctgcataataaatttccacaaaatcaa |
204 |
Q |
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| T |
8357448 |
tttacatttgacttcctacacaagctatcatccttatgacattgtttccgtgatctacctgcttaatttatttccacaaaatcaa |
8357364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 326 - 384
Target Start/End: Complemental strand, 8356954 - 8356896
Alignment:
| Q |
326 |
acctgatctccgaagagaacaaagccacccagaacatgtcatgtagaaaaatattgatt |
384 |
Q |
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| T |
8356954 |
acctgatcttcgaagataacaaagccaaccagaatatgtcatgtagaaaaatattgatt |
8356896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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