View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20384_high_89 (Length: 393)

Name: NF20384_high_89
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20384_high_89
NF20384_high_89
[»] chr6 (13 HSPs)
chr6 (18-376)||(22901515-22901873)
chr6 (18-271)||(22883585-22883838)
chr6 (269-376)||(22883868-22883975)
chr6 (269-376)||(22916597-22916704)
chr6 (170-271)||(22916466-22916567)
chr6 (276-376)||(22982840-22982940)
chr6 (276-376)||(23805468-23805568)
chr6 (18-156)||(22983095-22983230)
chr6 (18-156)||(23805178-23805313)
chr6 (183-269)||(22963050-22963137)
chr6 (183-269)||(23825256-23825343)
chr6 (185-269)||(22982984-22983069)
chr6 (185-269)||(23805339-23805424)


Alignment Details
Target: chr6 (Bit Score: 347; Significance: 0; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 18 - 376
Target Start/End: Original strand, 22901515 - 22901873
Alignment:
Q  18 aatagaaagatcttcccatatggaataattaactagcaaagtgattgatatttggcaagtctatcagaactcatcaagtaataaacgagtttgtatccac 117  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  22901515 aatagaaagatcttcccatatggaataattaactagcaaattgattgatatttggcaagtctatcagaactcatcaagtaataaaagagtttgtatccac 22901614  T
Q  118 aggtattatacgattagttagaaaacttaccaattatatgttagttataagtgatcaatttagagggtttgcataaactttggttttaaagaatgaaaat 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  22901615 aggtattatacgattagttagaaaacttaccaattatatgttagttataagtgatcaatttagagggtttgcataaactttggttttaaagaatgaaaaa 22901714  T
Q  218 aaattgaataaaacaaggatggaacaagcgattagaacttctgaatttcttacgctaattatcacattaagatgatgtaatatgtctaaagcgtttatct 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22901715 aaattgaataaaacaaggatggaacaagcgattagaacttctgaatttcttacgctaattatcacattaagatgatgtaatatgtctaaagcgtttatct 22901814  T
Q  318 aatgaacatttatccaagatccagttacaataaccaagactaacagacaattgtttcct 376  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22901815 aatgaacatttatccaagatccagttacaataaccaagactaacagacaattgtttcct 22901873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 18 - 271
Target Start/End: Original strand, 22883585 - 22883838
Alignment:
Q  18 aatagaaagatcttcccatatggaataattaactagcaaagtgattgatatttggcaagtctatcagaactcatcaagtaataaacgagtttgtatccac 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  22883585 aatagaaagatcttcccatatggaataattaactagcaaagtgattgatatttggcaagtctatcagaactcatcaagtaataaaagagtttgtatccac 22883684  T
Q  118 aggtattatacgattagttagaaaacttaccaattatatgttagttataagtgatcaatttagagggtttgcataaactttggttttaaagaatgaaaat 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22883685 aggtattatacgattagttagaaaacttaccaattatatgttagttataagtgatcaatttagagggtttgcataaactttggttttaaagaatgaaaat 22883784  T
Q  218 aaattgaataaaacaaggatggaacaagcgattagaacttctgaatttcttacg 271  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  22883785 aaattgaataaaacaaggatggaaaaagcgattagaacttttgaatttcttacg 22883838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 269 - 376
Target Start/End: Original strand, 22883868 - 22883975
Alignment:
Q  269 acgctaattatcacattaagatgatgtaatatgtctaaagcgtttatctaatgaacatttatccaagatccagttacaataaccaagactaacagacaat 368  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22883868 acgctaattatcacattaagatgatgcaatatgtctaaagcgtttatctaatgaacatttatccaagatccagttacaataaccaagactaacagacaat 22883967  T
Q  369 tgtttcct 376  Q
    ||||||||    
T  22883968 tgtttcct 22883975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 269 - 376
Target Start/End: Original strand, 22916597 - 22916704
Alignment:
Q  269 acgctaattatcacattaagatgatgtaatatgtctaaagcgtttatctaatgaacatttatccaagatccagttacaataaccaagactaacagacaat 368  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  22916597 acgctaattatcacattaagatgatgcaatatgtctaaagcgtttatctaatgaacatttatccaaaatccagttacaataaccaagactaacagacaat 22916696  T
Q  369 tgtttcct 376  Q
    ||| ||||    
T  22916697 tgtgtcct 22916704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 170 - 271
Target Start/End: Original strand, 22916466 - 22916567
Alignment:
Q  170 gatcaatttagagggtttgcataaactttggttttaaagaatgaaaataaattgaataaaacaaggatggaacaagcgattagaacttctgaatttctta 269  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||    
T  22916466 gatcaatttggagggtttgcataaactttggttttaaagaatgaaaataaattgaataaaacaaggatggaaaaagcgattagaacttttgaatttctta 22916565  T
Q  270 cg 271  Q
    ||    
T  22916566 cg 22916567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 276 - 376
Target Start/End: Complemental strand, 22982940 - 22982840
Alignment:
Q  276 ttatcacattaagatgatgtaatatgtctaaagcgtttatctaatgaacatttatccaagatccagttacaataaccaagactaacagacaattgtttcc 375  Q
    |||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||    
T  22982940 ttatcacattaagatgatgtaataagtctaaagcgattatgtaatgaacatttatccaagatccagttacaataactaagattaatagacaattgtttcc 22982841  T
Q  376 t 376  Q
    |    
T  22982840 t 22982840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 276 - 376
Target Start/End: Original strand, 23805468 - 23805568
Alignment:
Q  276 ttatcacattaagatgatgtaatatgtctaaagcgtttatctaatgaacatttatccaagatccagttacaataaccaagactaacagacaattgtttcc 375  Q
    |||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||    
T  23805468 ttatcacattaagatgatgtaataagtctaaagcgattatgtaatgaacatttatccaagatccagttacaataactaagattaatagacaattgtttcc 23805567  T
Q  376 t 376  Q
    |    
T  23805568 t 23805568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 18 - 156
Target Start/End: Complemental strand, 22983230 - 22983095
Alignment:
Q  18 aatagaaagatcttcccatatggaataattaactagcaaagtgattgatatttggcaagtctatcagaactcatcaagtaataaacgagtttgtatccac 117  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| || || || |  ||||| ||||||  ||||||||| |||    
T  22983230 aataaaaagatcttcccatatggaataattaactagcaaagtgattgatatctggcaagtgtaccaaaatttgtcaagcaataaaaaagtttgtattcac 22983131  T
Q  118 aggtattatacgattagttagaaaacttaccaattatat 156  Q
    ||   |||| |||||| | |||||||||| |||||||||    
T  22983130 ag---ttatgcgattaatcagaaaacttaacaattatat 22983095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 18 - 156
Target Start/End: Original strand, 23805178 - 23805313
Alignment:
Q  18 aatagaaagatcttcccatatggaataattaactagcaaagtgattgatatttggcaagtctatcagaactcatcaagtaataaacgagtttgtatccac 117  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| || || || |  ||||| ||||||  ||||||||| |||    
T  23805178 aataaaaagatcttcccatatggaataattaactagcaaagtgattgatatctggcaagtgtaccaaaatttgtcaagcaataaaaaagtttgtattcac 23805277  T
Q  118 aggtattatacgattagttagaaaacttaccaattatat 156  Q
    ||   |||| |||||| | |||||||||| |||||||||    
T  23805278 ag---ttatgcgattaatcagaaaacttaacaattatat 23805313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 183 - 269
Target Start/End: Complemental strand, 22963137 - 22963050
Alignment:
Q  183 ggtttgcataaactttggttttaaagaatgaaaataaattgaataaaacaagga-tggaacaagcgattagaacttctgaatttctta 269  Q
    |||||||||||||||||| ||||| ||||  ||||||||||||| ||||||||| || || ||| |||||| ||||  ||||||||||    
T  22963137 ggtttgcataaactttggatttaaggaatttaaataaattgaattaaacaaggattgtaaaaagtgattaggactttcgaatttctta 22963050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 183 - 269
Target Start/End: Original strand, 23825256 - 23825343
Alignment:
Q  183 ggtttgcataaactttggttttaaagaatgaaaataaattgaataaaacaagga-tggaacaagcgattagaacttctgaatttctta 269  Q
    |||||||||||||||||| ||||| ||||  ||||||||||||| ||||||||| || || ||| |||||| ||||  ||||||||||    
T  23825256 ggtttgcataaactttggatttaaggaatttaaataaattgaattaaacaaggattgtaaaaagtgattaggactttcgaatttctta 23825343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 269
Target Start/End: Complemental strand, 22983069 - 22982984
Alignment:
Q  185 tttgcataaactttggttttaaagaatgaaaataaattgaataaaacaaggatgg-aacaagcgattagaacttctgaatttctta 269  Q
    ||||||||||||| || ||||   ||| |||||||||||||| |||||||||||| || ||| |||||| ||||  ||||||||||    
T  22983069 tttgcataaacttgggatttatgaaattaaaataaattgaattaaacaaggatggtaaaaagtgattaggactttcgaatttctta 22982984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 269
Target Start/End: Original strand, 23805339 - 23805424
Alignment:
Q  185 tttgcataaactttggttttaaagaatgaaaataaattgaataaaacaaggatgg-aacaagcgattagaacttctgaatttctta 269  Q
    ||||||||||||| || ||||   ||| |||||||||||||| |||||||||||| || ||| |||||| ||||  ||||||||||    
T  23805339 tttgcataaacttgggatttatgaaattaaaataaattgaattaaacaaggatggtaaaaagtgattaggactttcgaatttctta 23805424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University