View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_high_90 (Length: 386)
Name: NF20384_high_90
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_high_90 |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 19 - 380
Target Start/End: Original strand, 39509678 - 39510039
Alignment:
| Q |
19 |
cccactgagctaagttcacttgttcccttggaagggacggttcaatggctggtcttgcacacaaaacttcaagtagaaccacgccgaatgaatacacatc |
118 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
39509678 |
cccactgagctaagttcacttgttcccttggaagtgacggttcaatggctgttcttgcacataatacttcaagtagaaccacgccgaatgaatacacatc |
39509777 |
T |
|
| Q |
119 |
agatttttctgtaagctgttgtgatctaaagtactcaggatcgagataaccgaaagttcccttaacacctgtgttgacataagaatgctgatcaagagga |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
39509778 |
agatttttctgtaagctgttgtgatctaaagtactcaggatcgagataaccgaaagttcccttaacacctgtgctgacataagaatgctgatcaagagga |
39509877 |
T |
|
| Q |
219 |
ccagttcttgaaagaccaaaatcagcaactttagcaacaagatgttcatcaagcaatatgtttgtggattttacatcgcggtgaatgataccaccagctg |
318 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||| || ||||||||||||||||| |||||||||| |
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| T |
39509878 |
ccagttcttgaaagaccaaaatcagcaactttagctacaagatgctcatcaagcaatatgttagtggacttcacatcgcggtgaatgattccaccagctg |
39509977 |
T |
|
| Q |
319 |
cccctttgtgaaggtattgaagacctcttgcagcaccaatacaaatctcaagcctttgcttc |
380 |
Q |
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| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
39509978 |
ctcctttgtgaaggtaatgaagacctctagcagcaccaatacaaatctcaagcctttgcttc |
39510039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 63 - 380
Target Start/End: Original strand, 39542787 - 39543104
Alignment:
| Q |
63 |
atggctggtcttgcacacaaaacttcaagtagaaccacgccgaatgaatacacatcagatttttctgtaagctgttgtgatctaaagtactcaggatcga |
162 |
Q |
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|||||||||||||| ||||| || |||||||||||||| || || ||||| |||||||||||||||||||||||||||| ||||||||| |||||||| | |
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| T |
39542787 |
atggctggtcttgcgcacaacacctcaagtagaaccaccccaaaagaataaacatcagatttttctgtaagctgttgtgctctaaagtaatcaggatcaa |
39542886 |
T |
|
| Q |
163 |
gataaccgaaagttcccttaacacctgtgttgacataagaatgctgatcaagaggaccagttcttgaaagaccaaaatcagcaactttagcaacaagatg |
262 |
Q |
| |
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|||| || ||||| || ||||||| |||| ||||||||||||| | |||||||||||| || ||||||||||||||||||||||||||||| ||||||| |
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| T |
39542887 |
gatacccaaaagtccctttaacacgtgtgctgacataagaatgttcatcaagaggacctgtccttgaaagaccaaaatcagcaactttagctacaagatt |
39542986 |
T |
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| Q |
263 |
ttcatcaagcaatatgtttgtggattttacatcgcggtgaatgataccaccagctgcccctttgtgaaggtattgaagacctcttgcagcaccaatacaa |
362 |
Q |
| |
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|||||||||||||| || |||||||| || || |||||||| || ||||||||| | |||||||||||||| ||||||||||| ||||||||||| ||| |
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| T |
39542987 |
ctcatcaagcaatatattagtggatttcacgtcacggtgaattattccaccagctactcctttgtgaaggtaatgaagacctctagcagcaccaatgcaa |
39543086 |
T |
|
| Q |
363 |
atctcaagcctttgcttc |
380 |
Q |
| |
|
|||||||||||||||||| |
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| T |
39543087 |
atctcaagcctttgcttc |
39543104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 58 - 380
Target Start/End: Original strand, 39574617 - 39574939
Alignment:
| Q |
58 |
gttcaatggctggtcttgcacacaaaacttcaagtagaaccacgccgaatgaatacacatcagatttttctgtaagctgttgtgatctaaagtactcagg |
157 |
Q |
| |
|
|||| |||||||||||||| ||||| ||||||||||||||||| || || || || ||||| |||||||||||||||||||||||||||||||| || || |
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| T |
39574617 |
gttctatggctggtcttgcgcacaacacttcaagtagaaccaccccaaaagagtaaacatcggatttttctgtaagctgttgtgatctaaagtaatccgg |
39574716 |
T |
|
| Q |
158 |
atcgagataaccgaaagttcccttaacacctgtgttgacataagaatgctgatcaagaggaccagttcttgaaagaccaaaatcagcaactttagcaaca |
257 |
Q |
| |
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||| ||||| || ||||| || ||||||| |||| ||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||| ||| |
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| T |
39574717 |
atcaagatacccaaaagtccctttaacacatgtgctgacataagaatgttgatcaagaggacctgtccttgaaagaccaaaatcagcaactttagctaca |
39574816 |
T |
|
| Q |
258 |
agatgttcatcaagcaatatgtttgtggattttacatcgcggtgaatgataccaccagctgcccctttgtgaaggtattgaagacctcttgcagcaccaa |
357 |
Q |
| |
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|||| || ||||||||||| || |||||||| ||||| ||||| || || ||||| ||| | |||||||||||||| ||||||||||| |||||||||| |
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| T |
39574817 |
agattctcgtcaagcaatatattagtggatttcacatcacggtggattattccaccggctactcctttgtgaaggtaatgaagacctctagcagcaccaa |
39574916 |
T |
|
| Q |
358 |
tacaaatctcaagcctttgcttc |
380 |
Q |
| |
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| ||||||||||||||||||||| |
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| T |
39574917 |
tgcaaatctcaagcctttgcttc |
39574939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 58 - 380
Target Start/End: Original strand, 39579150 - 39579472
Alignment:
| Q |
58 |
gttcaatggctggtcttgcacacaaaacttcaagtagaaccacgccgaatgaatacacatcagatttttctgtaagctgttgtgatctaaagtactcagg |
157 |
Q |
| |
|
|||| |||||||||||||| ||||| ||||||||||||||||| || || ||||| ||||| |||||||||||||| ||| ||||||||||||| ||||| |
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| T |
39579150 |
gttcgatggctggtcttgcgcacaacacttcaagtagaaccaccccaaaagaataaacatcggatttttctgtaaggtgtagtgatctaaagtaatcagg |
39579249 |
T |
|
| Q |
158 |
atcgagataaccgaaagttcccttaacacctgtgttgacataagaatgctgatcaagaggaccagttcttgaaagaccaaaatcagcaactttagcaaca |
257 |
Q |
| |
|
||| ||||| || ||||| || |||||||||||| | ||||||||||| |||||||||||||| | ||||||| |||||||||||||||||||||||| |
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| T |
39579250 |
atcaagatacccaaaagtccctttaacacctgtgctcacataagaatgttgatcaagaggacctgcctttgaaaggccaaaatcagcaactttagcaaca |
39579349 |
T |
|
| Q |
258 |
agatgttcatcaagcaatatgtttgtggattttacatcgcggtgaatgataccaccagctgcccctttgtgaaggtattgaagacctcttgcagcaccaa |
357 |
Q |
| |
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|||| |||||||||||||| || |||||||| ||||| ||||| || || |||||||| | |||||||||||||| ||||||||||| |||||||||| |
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| T |
39579350 |
agattctcatcaagcaatatattagtggatttcacatcacggtggattattccaccagcaactcctttgtgaaggtaatgaagacctctagcagcaccaa |
39579449 |
T |
|
| Q |
358 |
tacaaatctcaagcctttgcttc |
380 |
Q |
| |
|
||||||||||||||||||||||| |
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| T |
39579450 |
tacaaatctcaagcctttgcttc |
39579472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 139
Target Start/End: Original strand, 22901304 - 22901374
Alignment:
| Q |
69 |
ggtcttgcacacaaaacttcaagtagaaccacgccgaatgaatacacatcagatttttctgtaagctgttg |
139 |
Q |
| |
|
||||||||||||| ||| ||||| ||||| || || ||||||||||| || ||||||||||| || ||||| |
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|
| T |
22901304 |
ggtcttgcacacagaacctcaagcagaactaccccaaatgaatacacgtccgatttttctgttagttgttg |
22901374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 139
Target Start/End: Original strand, 22952972 - 22953042
Alignment:
| Q |
69 |
ggtcttgcacacaaaacttcaagtagaaccacgccgaatgaatacacatcagatttttctgtaagctgttg |
139 |
Q |
| |
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||||||||||||| ||| ||||| ||||| || || ||||||||||| || ||||||||||| || ||||| |
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| T |
22952972 |
ggtcttgcacacagaacctcaagcagaactaccccaaatgaatacacgtccgatttttctgttagttgttg |
22953042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 325 - 380
Target Start/End: Original strand, 35904669 - 35904724
Alignment:
| Q |
325 |
tgtgaaggtattgaagacctcttgcagcaccaatacaaatctcaagcctttgcttc |
380 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |||||||| | |||||||||| |
|
|
| T |
35904669 |
tgtgaaggtaatgaagacctcttgcagcaccaatgcaaatctccaacctttgcttc |
35904724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 306
Target Start/End: Complemental strand, 17349942 - 17349860
Alignment:
| Q |
224 |
tcttgaaagaccaaaatcagcaactttagcaacaagatgttcatcaagcaatatgtttgtggattttacatcgcggtgaatga |
306 |
Q |
| |
|
|||||||||||| |||||||| || ||||||||| ||| ||| || ||||| ||||| |||||||| | |||||||| |||| |
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| T |
17349942 |
tcttgaaagaccgaaatcagccaccttagcaacatgatcttcgtcgagcaaaatgttggtggatttaatgtcgcggtggatga |
17349860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 125
Target Start/End: Original strand, 4652414 - 4652471
Alignment:
| Q |
68 |
tggtcttgcacacaaaacttcaagtagaaccacgccgaatgaatacacatcagatttt |
125 |
Q |
| |
|
|||||| |||||||| || ||||| || ||||| |||||||| ||||||||||||||| |
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|
| T |
4652414 |
tggtctagcacacaacacctcaagaagcaccacaccgaatgagtacacatcagatttt |
4652471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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