View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20384_high_94 (Length: 380)
Name: NF20384_high_94
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_high_94 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 18 - 370
Target Start/End: Complemental strand, 5460777 - 5460424
Alignment:
| Q |
18 |
acatttgatttggagcatttcaagagtgctcttgccaatgatgtgcaagtggttttcatcattgccaacatataagcgtctttctcataccatatttgat |
117 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
5460777 |
acatttgatttggagcatttcaagaatgctcttgccaatgatgtgcatgtggttttcatcattgccaaaatataagcgtctttctcataccatatttgat |
5460678 |
T |
|
| Q |
118 |
atggtatcaggaatgcgaagatgatatagaaatatataaagtaaagacaggtaagttgtgacaagaagattgaacaggtatcgattaggcctaaaggcat |
217 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5460677 |
atggtatcgggaatgcaaagatgatatagaaatatataaagtaaagacaggtaagttgtgacaagaagattgaacaggtatcgattaggcctaaaggcat |
5460578 |
T |
|
| Q |
218 |
acagattatttactcaaggattatgaatatctttgagactataacctccgaattaagatgaaataaagttaccaaatctctattttgtcacttaacaaag |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
5460577 |
acagattatttactcaaggattatgaatatctttgagactataacctccgaattaagatgaaataaagttaccaaatctctattttgtcacttaacagag |
5460478 |
T |
|
| Q |
318 |
cataataagagctatataaagccttct-ttttcttccttatgttcactcctttg |
370 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
5460477 |
cataataagagctatataaagccttcttttttcttccttatgttcactcctttg |
5460424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 7748118 - 7748170
Alignment:
| Q |
20 |
atttgatttggagcatttcaagagtgctcttgccaatgatgtgcaagtggttt |
72 |
Q |
| |
|
||||||||| ||||| ||||||| || ||||||||||||||||| ||||||| |
|
|
| T |
7748118 |
atttgattttgagcacttcaagaatgttcttgccaatgatgtgcgggtggttt |
7748170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University