View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_high_98 (Length: 376)
Name: NF20384_high_98
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_high_98 |
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Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 5 - 346
Target Start/End: Complemental strand, 33653614 - 33653273
Alignment:
| Q |
5 |
aagaattgcggaaagaagtgcgttgaagaagactggaacagaaactaagacttctttgacttctgcaaggaaagggaatcctaagattcatccatctaat |
104 |
Q |
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| T |
33653614 |
aagaattgcggaaagaagtgcgttgaagaagactggaacagaagctaagacttctttgacttctgcaaggaaagggaatcctaagattcatccatctaat |
33653515 |
T |
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| Q |
105 |
ggagagactaagaaactcaacaaaccagtccttaggagttccaccatcgatcgccttgcaactgcccgagtaactcagcagaaggtttcacctagtcaag |
204 |
Q |
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| T |
33653514 |
ggagagactaagaaacacaacaaaccagtccttaggagttccaccatcgatcgccttgcaactgcccgagtaactcagcagaaggtttcacctagtcaag |
33653415 |
T |
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| Q |
205 |
taaattcaggtccaaccaagaagccttccttgaaggcaaataagctggtacctttgcagaagaagcagctccaaaaacaagtgaaatcttcaaatcataa |
304 |
Q |
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| T |
33653414 |
taaattcaggtccaaccaagaagccttccttgaaggcaaataagctggtacctttgcagaagaagcagctccaaaaagaagtgaaatcttcaaatcataa |
33653315 |
T |
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| Q |
305 |
agaagacgcacataaaacaaaagggaaagttctttccaagag |
346 |
Q |
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| T |
33653314 |
agaagacgcacataaaacaaaagggaaagttctttccaagag |
33653273 |
T |
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