View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_low_102 (Length: 386)
Name: NF20384_low_102
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_102 |
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Alignment Details
Target: chr8 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 370
Target Start/End: Complemental strand, 31605704 - 31605322
Alignment:
| Q |
1 |
ttgttgttccattctggtgatgcatcatttggtaaaagtgattctggtaaatgggatatatacttagatgaattaaaattcataatgtagagaaaatgac |
100 |
Q |
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| T |
31605704 |
ttgttgttccattctggtgatgcatcatttggtaaaagtgattctggtaaatgggatatatacttagatgaattaaaattcataatgtagagaaaatgac |
31605605 |
T |
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| Q |
101 |
ctaagttttgaggaaaattttctggttggtggagtgtggtttggactatatagtataattaattttggacatttttctcaaggtatctttggaataatca |
200 |
Q |
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| T |
31605604 |
ctaagttttgaggaaaattttctggttggtggagtgtggtttggactatatagtataattaattttggacatttttctaaaggtatctttggaataatca |
31605505 |
T |
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| Q |
201 |
tcaaaagttgtggtttcttgttgc-ggtggctggacattgtttgatgatgcaataagattcaattgaaaattct------------aacctgaattcaag |
287 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
31605504 |
tcaaaagttgtggtttcttgttgcgggtggctggacattgtttgatgatgcaataagattcaattgaaaattctattattttgatgaacctgaattcaag |
31605405 |
T |
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| Q |
288 |
attcctagcccacttcatagaatttcagcttaagtcaattttggttttgtaacttgtgattgagacaagagttgtcaattcat |
370 |
Q |
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||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31605404 |
attcctagcccacctcatagaatttcagctaaagtcaattttggttttgtaacttgtgattgagacaagagttgtcaattcat |
31605322 |
T |
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