View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_low_103 (Length: 385)
Name: NF20384_low_103
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_103 |
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Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 369
Target Start/End: Original strand, 49400833 - 49401202
Alignment:
| Q |
1 |
ttagcggctaaaagatttaaaaacgtgacagagggttggtgagaatgaatagaagaaggagtaaagggctgagatagtaatatgtaaatgtgattaaaga |
100 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
49400833 |
ttagtggctaaaagatttaaaaacgtgacagagggttggtgagaatgaacagaagaaggagtgaagggctgagatagtaatatgtaaatgtgattaaaga |
49400932 |
T |
|
| Q |
101 |
aacgaacggctaggatgtatttaaagatccatgagtgtgactagacgaaaaagtgttttgactatggcgcatgaattggacaggtttcttctgcaatgca |
200 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49400933 |
aacgaacggcaaggatgtatttaaagatccatgagtgtgactagacgaaaaagtgttttgactatggcgcatgaattggacaggtttcttctgcaatgca |
49401032 |
T |
|
| Q |
201 |
atcaacttttgcaacaacagtgatttgccgcaactatactttcttcttgtttttggacgttactaataaccactgtttcatacgaagcaccctgccaatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49401033 |
atcaacttttgcaacaacagtgatttgccgcaactatactttcttcttgtttttggacgttactaataaccactgtttcatacgaagcaccctgccaatt |
49401132 |
T |
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| Q |
301 |
ataatgtcggtcacatttttctcc-annnnnnnnaatctgatgttttatttacatgtaagtagacataat |
369 |
Q |
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|||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||| |
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| T |
49401133 |
ataatgtcggtcacatttttctccaatttattttaatccgatgttttatttacatgtaagtagacataat |
49401202 |
T |
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