View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_low_104 (Length: 382)
Name: NF20384_low_104
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_104 |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 23 - 370
Target Start/End: Complemental strand, 44499535 - 44499188
Alignment:
| Q |
23 |
agcaagactacaaagcaacgccataaaaccttcaaagcaagaagagaaaccacgctcaacaaacaaagagaagaaactgataaaacctgcacagtgaaaa |
122 |
Q |
| |
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|||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
44499535 |
agcaggactacaaagcaacgccataaaaccttcaatgcaagaagagaaaccacgctgaacaaacaaagagaagaaactgataaaacctgcgcagtgaaaa |
44499436 |
T |
|
| Q |
123 |
gctagaaaggtaagcttcaagatctggagaatcgaacgaaattggagaacaatcggaggagagaggtgcgaatctgagcagttacggaggagaacagagc |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44499435 |
gctagaaaggtaagcttcaagatctggagaatcgaacgaaattggagaacaatcggaggagagaggtgcgaatctgagcagttacggaggagaacagagc |
44499336 |
T |
|
| Q |
223 |
aaaaccaacgccggaaggagaagcaaggtcacctgtgcgaatctgtccatcaattttctcttcaaaactgatcttccttccacgaaagggtcgttctccg |
322 |
Q |
| |
|
||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
44499335 |
aaaaccaacgccgaaaggagaagaaaggtcatctgtgcgaatctgtccatcaattttctcttcaaaactaatctcccttccacgaaagggtcgttctccg |
44499236 |
T |
|
| Q |
323 |
ttgcgccacgccgccatcatgcaaccaccaccattcctatattcttcg |
370 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||||| |||||| |
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| T |
44499235 |
ttgcgccacgccgccgtcatgcaaccaccaccattcctatagtcttcg |
44499188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 23 - 363
Target Start/End: Original strand, 24191670 - 24192009
Alignment:
| Q |
23 |
agcaagactacaaagcaacgccataaaaccttcaaagcaagaagagaaaccacgctcaacaaacaaagagaagaaactgataaaacctgcacagtgaaaa |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
24191670 |
agcaagactacaaagcaacgccataaaaccttcaaagcaagaagagaaaccacgctgaacaaacaaagagaagaaactgataaaacctgcgcagtgaaaa |
24191769 |
T |
|
| Q |
123 |
gctagaaaggtaagcttcaagatctggagaatcgaacgaaattggagaacaatcggaggagagaggtgcgaatctgagcagttacggaggagaacagagc |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
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|
| T |
24191770 |
gctagaaaggtaagcttcaagatctggagaatcgaccgaaattggagaacaatcggaggagagaggtgcgaatctaagcagttacggaggagaatggagc |
24191869 |
T |
|
| Q |
223 |
aaaaccaacgccggaaggagaagcaaggtcacctgtgcgaatctgtccatcaattttctcttcaaaactgatcttccttccacgaaagggtcgttctccg |
322 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
24191870 |
aaaaccaacgccggaaggagaagaaaggtctcctgtgcgaatctgtccatcaattttctcttcaaaactgatctcccttccacgaaagggtcgttctccg |
24191969 |
T |
|
| Q |
323 |
ttgcgccacgccgccatcatgcaaccaccaccattcctata |
363 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||||| |
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|
| T |
24191970 |
ttgcgccacgccgccgtcatgc-accaccaccattcctata |
24192009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 23 - 370
Target Start/End: Complemental strand, 44376285 - 44375938
Alignment:
| Q |
23 |
agcaagactacaaagcaacgccataaaaccttcaaagcaagaagagaaaccacgctcaacaaacaaagagaagaaactgataaaacctgcacagtgaaaa |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| | | ||||||||| |||||||||||||| ||| ||||| |
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| T |
44376285 |
agcaagactacaaagcaacgccataaaaccttcaaagcatgaagagaaaccacgctggacagatagagagaagaagctgataaaacctgcgcagggaaaa |
44376186 |
T |
|
| Q |
123 |
gctagaaaggtaagcttcaagatctggagaatcgaacgaaattggagaacaatcggaggagagaggtgcgaatctgagcagttacggaggagaacagagc |
222 |
Q |
| |
|
|| ||||||||||||||| ||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
44376185 |
gccagaaaggtaagcttcgagatccggagaatcgaccgaaattggagaacagtcggaggagagaggtgcgaatctgagcagttacggaggagaacggagc |
44376086 |
T |
|
| Q |
223 |
aaaaccaacgccggaaggagaagcaaggtcacctgtgcgaatctgtccatcaattttctcttcaaaactgatcttccttccacgaaagggtcgttctccg |
322 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
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|
| T |
44376085 |
aaaaccaacgccggaaggagaagaaaggtcacctgtgcgaatatgtcgatcaattttctcttcaaaactgatctcccttctacgaaagggtcgttctccg |
44375986 |
T |
|
| Q |
323 |
ttgcgccacgccgccatcatgcaaccaccaccattcctatattcttcg |
370 |
Q |
| |
|
| ||| ||| ||||| |||||||||||||||||| |||||| |||||| |
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|
| T |
44375985 |
tcgcgtcaccccgccgtcatgcaaccaccaccatccctatagtcttcg |
44375938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 23 - 370
Target Start/End: Complemental strand, 44385152 - 44384805
Alignment:
| Q |
23 |
agcaagactacaaagcaacgccataaaaccttcaaagcaagaagagaaaccacgctcaacaaacaaagagaagaaactgataaaacctgcacagtgaaaa |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| | | ||||||||| |||||||||||||| ||| ||||| |
|
|
| T |
44385152 |
agcaagactacaaagcaacgccataaaaccttcaaagcatgaagagaaaccacgctggacagatagagagaagaagctgataaaacctgcgcagggaaaa |
44385053 |
T |
|
| Q |
123 |
gctagaaaggtaagcttcaagatctggagaatcgaacgaaattggagaacaatcggaggagagaggtgcgaatctgagcagttacggaggagaacagagc |
222 |
Q |
| |
|
|| ||||||||||||||| ||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
44385052 |
gccagaaaggtaagcttcgagatccggagaatcgaccgaaattggagaacagtcggaggagagaggtgcgaatctgagcagttacggaggagaacggagc |
44384953 |
T |
|
| Q |
223 |
aaaaccaacgccggaaggagaagcaaggtcacctgtgcgaatctgtccatcaattttctcttcaaaactgatcttccttccacgaaagggtcgttctccg |
322 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
44384952 |
aaaaccaacgccggaaggagaagaaaggtcacctgtgcgaatatgtcgatcaattttctcttcaaaactgatctcccttctacgaaagggtcgttctccg |
44384853 |
T |
|
| Q |
323 |
ttgcgccacgccgccatcatgcaaccaccaccattcctatattcttcg |
370 |
Q |
| |
|
| ||| ||| ||||| |||||||||||||||||| |||||| |||||| |
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|
| T |
44384852 |
tcgcgtcaccccgccgtcatgcaaccaccaccatccctatagtcttcg |
44384805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 84
Target Start/End: Complemental strand, 27184305 - 27184268
Alignment:
| Q |
47 |
aaaaccttcaaagcaagaagagaaaccacgctcaacaa |
84 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |||| |
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|
| T |
27184305 |
aaaaccttcaaagaaagaagagaaaccacgctcgacaa |
27184268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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