View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_low_105 (Length: 381)
Name: NF20384_low_105
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_105 |
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Alignment Details
Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 208 - 291
Target Start/End: Original strand, 17179785 - 17179868
Alignment:
| Q |
208 |
ttactccatgtctagtctatactttaatgaattgtgctgaactttttaaaatcatttttgttagacacgagcttagttaaatta |
291 |
Q |
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| T |
17179785 |
ttactccatgtctagtctatactttaatgaattgtgctgaactttttaaaatcatttttgttacacacgagcttagttaaatta |
17179868 |
T |
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Target: chr2; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 293 - 380
Target Start/End: Original strand, 17179970 - 17180057
Alignment:
| Q |
293 |
acgagaaggatttaattcactaataagtattttcaactaaacactgtgtattgatacattctctccgtaccgagaattatctacccac |
380 |
Q |
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| T |
17179970 |
acgagaaggatttaattcactaataagtattttcaactaaacactgtgtattgatacattctctccgtaccgattattatttacccac |
17180057 |
T |
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Target: chr2; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 129 - 206
Target Start/End: Original strand, 17179671 - 17179748
Alignment:
| Q |
129 |
ggaggtttcttttcccacaaaaatggttggcgtaggtgacgtccacaaagaccagacacatgcacatgtttattgtat |
206 |
Q |
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| T |
17179671 |
ggaggtttcttttcccacaaaaatggttggtgtaggtgacgtccacaaagaccagacacatgcacatgtttattgtat |
17179748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 120 - 203
Target Start/End: Original strand, 17184670 - 17184753
Alignment:
| Q |
120 |
ggaggttggggaggtttcttttcccacaaaaatggttggcgtaggtgacgtccacaaagaccagacacatgcacatgtttattg |
203 |
Q |
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| T |
17184670 |
ggaggatggggaggtttcatttcccacaaaaatggtgggcgtaggtgacgaccacgaagatcagacacatgaacttgtttattg |
17184753 |
T |
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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 155
Target Start/End: Original strand, 17169709 - 17169769
Alignment:
| Q |
95 |
caatagtgaaaattggagaacttaaggaggttggggaggtttcttttcccacaaaaatggt |
155 |
Q |
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| T |
17169709 |
caatagtgaaaataggattacttggggatgctggggaggtttcttttcccacaaaaatggt |
17169769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 155
Target Start/End: Original strand, 17174515 - 17174577
Alignment:
| Q |
93 |
ttcaatagtgaaaattggagaacttaaggaggttggggaggtttcttttcccacaaaaatggt |
155 |
Q |
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| T |
17174515 |
ttcaatagtgaaaattgatttacttggggatgctggggaggtttcttttcccacaaaaatggt |
17174577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 325
Target Start/End: Original strand, 17188359 - 17188391
Alignment:
| Q |
293 |
acgagaaggatttaattcactaataagtatttt |
325 |
Q |
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| T |
17188359 |
acgagaaggattttattcactaataagtatttt |
17188391 |
T |
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