View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20384_low_108 (Length: 377)

Name: NF20384_low_108
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20384_low_108
NF20384_low_108
[»] chr7 (1 HSPs)
chr7 (17-370)||(440658-441012)
[»] chr4 (6 HSPs)
chr4 (259-370)||(35250151-35250262)
chr4 (256-370)||(51220004-51220118)
chr4 (260-370)||(51220795-51220905)
chr4 (43-129)||(35250035-35250121)
chr4 (266-370)||(51220433-51220537)
chr4 (277-312)||(35250268-35250303)
[»] chr1 (16 HSPs)
chr1 (259-358)||(38226964-38227063)
chr1 (286-370)||(27780994-27781078)
chr1 (256-342)||(17663562-17663648)
chr1 (271-368)||(38227192-38227289)
chr1 (286-370)||(27777477-27777561)
chr1 (286-369)||(27782400-27782483)
chr1 (286-358)||(38227135-38227207)
chr1 (271-358)||(38227048-38227135)
chr1 (256-342)||(17700331-17700417)
chr1 (258-368)||(21899126-21899236)
chr1 (259-325)||(27777591-27777657)
chr1 (259-325)||(27782304-27782370)
chr1 (286-323)||(27781080-27781117)
chr1 (286-325)||(27781156-27781195)
chr1 (274-325)||(27781234-27781285)
chr1 (294-331)||(21079010-21079047)


Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 17 - 370
Target Start/End: Original strand, 440658 - 441012
Alignment:
Q  17 agaaataagcaatgaaaataagtgaaatattataactaaacaaattcctaataaggaaaattgcatgattgcatcaaggatatccatcc----cacacaa 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    |||||||    
T  440658 agaaataagcaatgaaaataagtgaaatattataactaaacaaattcctaataaggaaaattacatgattgcatcaaggatatccatccatcccacacaa 440757  T
Q  113 aaatcataatatcattcttcataagaaaactnnnnnnnnnnntagacattgttggtttcatctttcaaaatcatcacttggaagataattcatgacaact 212  Q
    |||||||||||||||||||||||||||||||           |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  440758 aaatcataatatcattcttcataagaaaactataaaaaaaa-tagacactgttggtttcatctt-caaaatcatcacttggaagataattcatgacaact 440855  T
Q  213 cttgaccttaattcaattcgtcacnnnnnnnnngctataaaagaaagagacactaattagtttcatcttcaaaatcatcacttggaagctcgttcaaatc 312  Q
    ||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  440856 cttgaccttaattcaattcgtcacaaaaaaaa-gctataaaagaaagagacactaattagtttcatcttcaaagtcatcacttggaagctcgttcaaatc 440954  T
Q  313 aaaattcttcacaacttttgaccctaattcagtaacaccttcattaatcttcttctct 370  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  440955 aaaattcttcacaacttttggccctaattcagtaacaccttcattaatcatcttctct 441012  T

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Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 259 - 370
Target Start/End: Original strand, 35250151 - 35250262
Alignment:
Q  259 gagacactaattagtttcatcttcaaaatcatcacttggaagctcgttcaaatcaaaattcttcacaacttttgaccctaattcagtaacaccttcatta 358  Q
    |||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||  || ||||||||    
T  35250151 gagacactaattggattcatcttcaaaatcatcacttgcaagctcgttcaaatcaaaattcttcacaacttttgacccgatttcagtttcagcttcatta 35250250  T
Q  359 atcttcttctct 370  Q
    ||||||||||||    
T  35250251 atcttcttctct 35250262  T

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Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 256 - 370
Target Start/End: Original strand, 51220004 - 51220118
Alignment:
Q  256 aaagagacactaattagtttcatcttcaaaatcatcacttggaagctcgttcaaatcaaaattcttcacaacttttgaccctaattcagtaacaccttca 355  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||| | |||||| ||||||||||||||||  ||| |||     
T  51220004 aaagagacactaattggtttcatcttcaaaatcatcacttggaagctcattcgaatcaaaattcataacaactattgaccctaattcagtttcactttcg 51220103  T
Q  356 ttaatcttcttctct 370  Q
    |||||||||||||||    
T  51220104 ttaatcttcttctct 51220118  T

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Target: chr4; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 260 - 370
Target Start/End: Original strand, 51220795 - 51220905
Alignment:
Q  260 agacactaattagtttcatcttcaaaatcatcacttggaagctcgttcaaatcaaaattcttcacaacttttgaccctaattcagtaacaccttcattaa 359  Q
    |||||||| || ||||||||||||||| |||||||||||||||||||||| ||||||||| | |||| | ||||||||||||||||  ||| ||| ||||    
T  51220795 agacactagttggtttcatcttcaaaaccatcacttggaagctcgttcaattcaaaattcataacaattattgaccctaattcagtttcactttcgttaa 51220894  T
Q  360 tcttcttctct 370  Q
    |||||||||||    
T  51220895 tcttcttctct 51220905  T

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Target: chr4; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 43 - 129
Target Start/End: Original strand, 35250035 - 35250121
Alignment:
Q  43 atattataactaaacaaattcctaataaggaaaattgcatgattgcatcaaggatatccatcccacacaaaaatcataatatcattc 129  Q
    ||||| ||||||||||| |||| | ||||||||||| ||||||  |||||||| ||| ||||||||||||||| |||||||||||||    
T  35250035 atattttaactaaacaacttccaattaaggaaaattacatgataacatcaagggtattcatcccacacaaaaaccataatatcattc 35250121  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 266 - 370
Target Start/End: Complemental strand, 51220537 - 51220433
Alignment:
Q  266 taattagtttcatcttcaaaatcatcacttggaagctcgttcaaatcaaaattcttcacaacttttgaccctaattcagtaacaccttcattaatcttct 365  Q
    ||||| ||||||| ||||||| ||||||||||||| || || |||||| ||||| | |||  | |||| || |||| |||  ||||||||||||||||||    
T  51220537 taattggtttcatattcaaaagcatcacttggaagatcattaaaatcataattcataacatgtattgatccgaattaagtttcaccttcattaatcttct 51220438  T
Q  366 tctct 370  Q
    |||||    
T  51220437 tctct 51220433  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 277 - 312
Target Start/End: Original strand, 35250268 - 35250303
Alignment:
Q  277 atcttcaaaatcatcacttggaagctcgttcaaatc 312  Q
    ||||||||||||||||||||||||||||||||||||    
T  35250268 atcttcaaaatcatcacttggaagctcgttcaaatc 35250303  T

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Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 259 - 358
Target Start/End: Original strand, 38226964 - 38227063
Alignment:
Q  259 gagacactaattagtttcatcttcaaaatcatcacttggaagctcgttcaaatcaaaattcttcacaacttttgaccctaattcagtaacaccttcatta 358  Q
    |||||||||||| |||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||  |||||||||||    
T  38226964 gagacactaattggttttatcttcaaactcatcacttggaagctcgttcaaatctaaattcttcacaacttttgaccctgattcagtttcaccttcatta 38227063  T

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Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 286 - 370
Target Start/End: Complemental strand, 27781078 - 27780994
Alignment:
Q  286 atcatcacttggaagctcgttcaaatcaaaattcttcacaacttttgaccctaattcagtaacaccttcattaatcttcttctct 370  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||  ||  |||||||||||||||||||||||    
T  27781078 atcatcacttggaagctcgtccaaatcaaaattcttcacaacttttgaccctaattttgtttcaccttcattaatcttcttctct 27780994  T

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Target: chr1; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 256 - 342
Target Start/End: Complemental strand, 17663648 - 17663562
Alignment:
Q  256 aaagagacactaattagtttcatcttcaaaatcatcacttggaagctcgttcaaatcaaaattcttcacaacttttgaccctaattc 342  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| | |||||| |||||||||||||    
T  17663648 aaagaaacactaattggtttcatcttcaaaatcatcacttggaagctcattcaaatcaaaattcctgacaactcttgaccctaattc 17663562  T

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Target: chr1; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 271 - 368
Target Start/End: Original strand, 38227192 - 38227289
Alignment:
Q  271 agtttcatcttcaaaatcatcacttggaagctcgttcaaatcaaaattcttcacaacttttgaccctaattcagtaacaccttcattaatcttcttct 368  Q
    ||||||| |||||  ||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||| ||||||    
T  38227192 agtttcaccttcattatcgtcacttgaaagctcgttcaaatcaacattcttcacaacttttgaccctaattcagtttcaccttcattaatcgtcttct 38227289  T

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Target: chr1; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 286 - 370
Target Start/End: Complemental strand, 27777561 - 27777477
Alignment:
Q  286 atcatcacttggaagctcgttcaaatcaaaattcttcacaacttttgaccctaattcagtaacaccttcattaatcttcttctct 370  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||  |||||||||| ||||||||||||    
T  27777561 atcattacttggaagctcgttcaaatcaaaattcttcacaacttttgaccctagttctgtttcaccttcattcatcttcttctct 27777477  T

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Target: chr1; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 286 - 369
Target Start/End: Original strand, 27782400 - 27782483
Alignment:
Q  286 atcatcacttggaagctcgttcaaatcaaaattcttcacaacttttgaccctaattcagtaacaccttcattaatcttcttctc 369  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||  |||||||||| |||||||||||    
T  27782400 atcattacttggaagctcgttcaaatcaaaattcttcacaacttttgaccctagttctgtttcaccttcattcatcttcttctc 27782483  T

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Target: chr1; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 286 - 358
Target Start/End: Original strand, 38227135 - 38227207
Alignment:
Q  286 atcatcacttggaagctcgttcaaatcaaaattcttcacaacttttgaccctaattcagtaacaccttcatta 358  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||  |||||||||||    
T  38227135 atcatcacttggaagctcgttcaaatcaacattcttaacaacttttgaccctaattcagtttcaccttcatta 38227207  T

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Target: chr1; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 271 - 358
Target Start/End: Original strand, 38227048 - 38227135
Alignment:
Q  271 agtttcatcttcaaaatcatcacttggaagctcgttcaaatcaaaattcttcacaacttttgaccctaattcagtaacaccttcatta 358  Q
    ||||||| |||||  ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||   |||||||||||    
T  38227048 agtttcaccttcattatcatcacttggaagttcgttcaaatcaaaattcttcacatcttttgaccctaattcagcttcaccttcatta 38227135  T

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Target: chr1; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 256 - 342
Target Start/End: Original strand, 17700331 - 17700417
Alignment:
Q  256 aaagagacactaattagtttcatcttcaaaatcatcacttggaagctcgttcaaatcaaaattcttcacaacttttgaccctaattc 342  Q
    ||||| |||||||||  ||||||||||||||||||||||||||||||| |||||||||| |||| | |||||| |||||||||||||    
T  17700331 aaagaaacactaattgttttcatcttcaaaatcatcacttggaagctcattcaaatcaacattcctgacaactcttgaccctaattc 17700417  T

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Target: chr1; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 258 - 368
Target Start/End: Original strand, 21899126 - 21899236
Alignment:
Q  258 agagacactaattagtttcatcttcaaaatcatcacttggaagctcgttcaaatcaaaattcttcacaacttttgaccctaattcagtaacaccttcatt 357  Q
    ||||||||||||| ||||||||||||||||| ||||||| || ||| ||||||||||||||| |   |||| ||||||||||||| ||  |||||||  |    
T  21899126 agagacactaattggtttcatcttcaaaatcgtcacttgaaatctcattcaaatcaaaattcatagaaactcttgaccctaattcggtttcaccttcgct 21899225  T
Q  358 aatcttcttct 368  Q
    |||||| ||||    
T  21899226 aatctttttct 21899236  T

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Target: chr1; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 259 - 325
Target Start/End: Complemental strand, 27777657 - 27777591
Alignment:
Q  259 gagacactaattagtttcatcttcaaaatcatcacttggaagctcgttcaaatcaaaattcttcaca 325  Q
    |||||||||||| |||||||||||| |||||||||||| || |||||||||||| ||||||||||||    
T  27777657 gagacactaattggtttcatcttcacaatcatcacttgtaaactcgttcaaatctaaattcttcaca 27777591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 259 - 325
Target Start/End: Original strand, 27782304 - 27782370
Alignment:
Q  259 gagacactaattagtttcatcttcaaaatcatcacttggaagctcgttcaaatcaaaattcttcaca 325  Q
    |||||||||||| |||||||||||| |||||||||||| || |||||||||||| ||||||||||||    
T  27782304 gagacactaattggtttcatcttcacaatcatcacttgaaaactcgttcaaatctaaattcttcaca 27782370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 286 - 323
Target Start/End: Complemental strand, 27781117 - 27781080
Alignment:
Q  286 atcatcacttggaagctcgttcaaatcaaaattcttca 323  Q
    ||||||||||||||||||||||||||||||||||||||    
T  27781117 atcatcacttggaagctcgttcaaatcaaaattcttca 27781080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 286 - 325
Target Start/End: Complemental strand, 27781195 - 27781156
Alignment:
Q  286 atcatcacttggaagctcgttcaaatcaaaattcttcaca 325  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  27781195 atcatcacttggaagcttgttcaaatcaaaattcttcaca 27781156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 274 - 325
Target Start/End: Complemental strand, 27781285 - 27781234
Alignment:
Q  274 ttcatcttcaaaatcatcacttggaagctcgttcaaatcaaaattcttcaca 325  Q
    |||||||||||||| ||  ||||||||| ||||| |||||||||||||||||    
T  27781285 ttcatcttcaaaattatttcttggaagcacgttcgaatcaaaattcttcaca 27781234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 331
Target Start/End: Complemental strand, 21079047 - 21079010
Alignment:
Q  294 ttggaagctcgttcaaatcaaaattcttcacaactttt 331  Q
    |||||||||||||||||||||||||| | |||||||||    
T  21079047 ttggaagctcgttcaaatcaaaattcctaacaactttt 21079010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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