View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_low_109 (Length: 376)
Name: NF20384_low_109
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_109 |
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Alignment Details
Target: chr2 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 15 - 206
Target Start/End: Original strand, 13116287 - 13116478
Alignment:
| Q |
15 |
aagagagtaaaatgatagattatttgacgtgtaattataattgatgtgttaagacaagagagatagagaaaaaatgaaggattaaagagatgtaataaag |
114 |
Q |
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| T |
13116287 |
aagagagtaaaatgatagattatttgacgtgtaattataattgatgtgttaagataagagagatagagaaaaaatgaaggattaaagagatgtaataaag |
13116386 |
T |
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| Q |
115 |
gtaaacaaatataattgctctataagacatttattattttgtgaataatgaatttaatcaattaaacctctaactgatgttatgttatgtca |
206 |
Q |
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| T |
13116387 |
ataaacaaatataattgctctataagacatttattattttgtgaataatgaatttaatcaattaaacctctaactgatgttatgttatgtca |
13116478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 219 - 359
Target Start/End: Original strand, 13116550 - 13116693
Alignment:
| Q |
219 |
acttagcttactcttcaagttaacagggtcctacatattattccttaagcaagtcatatac--atattctatatatagatgggtgcaacatctccta-ca |
315 |
Q |
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| T |
13116550 |
acttagcttactcttcaagttaacagggtcctacatattattccttaagcaagtcatatacatatattctatatatagatgggtgcaacatctcctacca |
13116649 |
T |
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| Q |
316 |
aggcatctaaaactttagctcttccaagctagcttgctaacaat |
359 |
Q |
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| T |
13116650 |
aggcatctaaaacttgagcccttccaagctaactagttaacaat |
13116693 |
T |
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