View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_low_111 (Length: 375)
Name: NF20384_low_111
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_111 |
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| [»] scaffold0446 (1 HSPs) |
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Alignment Details
Target: scaffold0446 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: scaffold0446
Description:
Target: scaffold0446; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 13711 - 14060
Alignment:
| Q |
1 |
actattttatccttttgactactcaatcaaaattcctagataaaagtatcaccaaaagtgtaagaattgaaactaaatcatctgataattagccaataag |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13711 |
actattttatccttttgaatactcaatcaaaattcctagataaaagtatcaccaaaagtgtaagaattgaaactaaatcatctgataattagccaataag |
13810 |
T |
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| Q |
101 |
caattgcattatatgtaatacaatcttgactttcgtgcagtgattaatgttaatgaccggtccatctcatttgtgtttacaatctacctctgcacagact |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |
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| T |
13811 |
caattgcattatatgtaatacaatcttgactttcgtgcagtgattaatgttaatgactggtccatctcatttgtgttta----ctacctctgcacagact |
13906 |
T |
|
| Q |
201 |
tgtaaagcaccacagtaacatatttggacagaaaccgattggtagaaccaagggcaaccactgaaggactgctttctcctttcgggatgtaaaaatgatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13907 |
tgtaaagcaccacagtaacatatttggacagaaaccgattagtagaaccaagggcaaccactgaaggactgctttctcctttcgggatgtaaaaatgatt |
14006 |
T |
|
| Q |
301 |
gagcactgaatgttgaggtcttggcttagtaggttggatttccacatttgctgt |
354 |
Q |
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| T |
14007 |
gagcactgaatgttgaggtcttggcttagtaggttggatttccacattttctgt |
14060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 56048391 - 56048740
Alignment:
| Q |
1 |
actattttatccttttgactactcaatcaaaattcctagataaaagtatcaccaaaagtgtaagaattgaaactaaatcatctgataattagccaataag |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56048391 |
actattttatccttttgaatactcaatcaaaattcctagataaaagtatcaccaaaagtgtaagaattgaaactaaatcatctgataattagccaataag |
56048490 |
T |
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| Q |
101 |
caattgcattatatgtaatacaatcttgactttcgtgcagtgattaatgttaatgaccggtccatctcatttgtgtttacaatctacctctgcacagact |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |
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| T |
56048491 |
caattgcattatatgtaatacaatcttgactttcgtgcagtgattaatgttaatgactggtccatctcatttgtgttta----ctacctctgcacagact |
56048586 |
T |
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| Q |
201 |
tgtaaagcaccacagtaacatatttggacagaaaccgattggtagaaccaagggcaaccactgaaggactgctttctcctttcgggatgtaaaaatgatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56048587 |
tgtaaagcaccacagtaacatatttggacagaaaccgattagtagaaccaagggcaaccactgaaggactgctttctcctttcgggatgtaaaaatgatt |
56048686 |
T |
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| Q |
301 |
gagcactgaatgttgaggtcttggcttagtaggttggatttccacatttgctgt |
354 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
56048687 |
gagcactgaatgttgaggtcttggcttagtaggttggatttccacattttctgt |
56048740 |
T |
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