View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_low_113 (Length: 374)
Name: NF20384_low_113
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_113 |
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Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 112 - 356
Target Start/End: Original strand, 40600771 - 40601015
Alignment:
| Q |
112 |
cttattcttctaattttgaaatattaggggatgctatgatattttaattaataagaataagaagtggcgttacataatttgcaaaaacatgagttggaga |
211 |
Q |
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| T |
40600771 |
cttattcttctaattttgaaatattaggggatgctatgatattttaattaataagaataagaagtggcgttacataatttgcaaaaacatgagttggaga |
40600870 |
T |
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| Q |
212 |
catgactcagtaaagtgtgtatatttgctcattcatagccatcaaatcggcactgataataataattgtgggtattgtattgtgggatcaatgtgtctgt |
311 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40600871 |
catgactcagtaaagtgtgtatatgtgctcattcatagccatcaaatcggcactgataataataattgtgggtattgtattgtgggatcaatgtgtctgt |
40600970 |
T |
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| Q |
312 |
gttgcttaaactacatttgagatttttctattttgaggcaatttc |
356 |
Q |
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| T |
40600971 |
gttgcttaaactacatttgagatttttctattttgaggcaatttc |
40601015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 15 - 115
Target Start/End: Original strand, 32485711 - 32485811
Alignment:
| Q |
15 |
aatattacccaacttttatgccaattatccatggaacctgacacattagccttgattattgtgaagatacttgctcaaaacaaccgataatggtgctctt |
114 |
Q |
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| T |
32485711 |
aatactacccaacttttatgccaattatccatggaacctgacacattagccttggttattgtgaagatacttgctcaaaacaaccgataatggtgctctt |
32485810 |
T |
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| Q |
115 |
a |
115 |
Q |
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| T |
32485811 |
a |
32485811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 15 - 115
Target Start/End: Original strand, 780155 - 780255
Alignment:
| Q |
15 |
aatattacccaacttttatgccaattatccatggaacctgacacattagccttgattattgtgaagatacttgctcaaaacaaccgataatggtgctctt |
114 |
Q |
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| T |
780155 |
aatactacccaacttttatgccaattatccatggaacctgacacattagccttggttattgtgaagatacttgctcaaaacaaccgataatggtgctctt |
780254 |
T |
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| Q |
115 |
a |
115 |
Q |
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| T |
780255 |
a |
780255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 15 - 113
Target Start/End: Complemental strand, 4974454 - 4974356
Alignment:
| Q |
15 |
aatattacccaacttttatgccaattatccatggaacctgacacattagccttgattattgtgaagatacttgctcaaaacaaccgataatggtgctct |
113 |
Q |
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| T |
4974454 |
aatactacccaacttttatgccaattatccatggaacctgacacattagccttggttattgtgaagatacttgctcaaaacaaccgataatggtgctct |
4974356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 15 - 113
Target Start/End: Complemental strand, 23570841 - 23570743
Alignment:
| Q |
15 |
aatattacccaacttttatgccaattatccatggaacctgacacattagccttgattattgtgaagatacttgctcaaaacaaccgataatggtgctct |
113 |
Q |
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|||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||| |
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| T |
23570841 |
aatactacccaacttttatgtcaattatccatggaacctgacacattagccttggttattgtaaagagacttgctcaaaacaaccgataatggtgctct |
23570743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 46 - 113
Target Start/End: Original strand, 15877880 - 15877947
Alignment:
| Q |
46 |
tggaacctgacacattagccttgattattgtgaagatacttgctcaaaacaaccgataatggtgctct |
113 |
Q |
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| T |
15877880 |
tggaacctgacacattagccttggttattgtgaagatacttgctcaaaacgatcgataatggtgctct |
15877947 |
T |
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