View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_low_117 (Length: 369)
Name: NF20384_low_117
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_117 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 18 - 361
Target Start/End: Original strand, 18047741 - 18048073
Alignment:
| Q |
18 |
taaactgtatggaaatcccttgcatccaagtacttatgaacaggggggttctttggtgttgatttgcagaggtgtggtggttgacattggcatcatgggt |
117 |
Q |
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| T |
18047741 |
taaactggagggaaatcccttgcatgcaagaacttatgaacagggaggttctttggtgt--------agaggtgtggtggttgacattggcatcatgggt |
18047832 |
T |
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| Q |
118 |
agccttgtcttgatattttgttgttatttaagaggttgttgtatttcgttgttgcttttagaagtttactgctacaacaatattgttttcttgcattagc |
217 |
Q |
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| T |
18047833 |
agccttgtgttgatatttt-ttgttattttagagcttgttgtatttcgttgttgcttttagaagtttactgctacaacaatattgttttcttgcattagc |
18047931 |
T |
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| Q |
218 |
ccaattcaataacgtcttatattcagactgacgttttattaataaaatttgttgtaaagnnnnnnngttgaatttcattatttatatatatttttccttt |
317 |
Q |
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| T |
18047932 |
tcaattcaataacgtcttatattcggattgacgttttattaataaaatttgttgtagagaaaaaaagttgaatttcattatt--tatatatttttccttt |
18048029 |
T |
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| Q |
318 |
tgaatctatgtatggtttactaattcagccacctgttagcctat |
361 |
Q |
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| T |
18048030 |
tgaatttatctctggtttactaattcatccacctgttagcctat |
18048073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 18 - 361
Target Start/End: Complemental strand, 4397585 - 4397253
Alignment:
| Q |
18 |
taaactgtatggaaatcccttgcatccaagtacttatgaacaggggggttctttggtgttgatttgcagaggtgtggtggttgacattggcatcatgggt |
117 |
Q |
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| T |
4397585 |
taaactggagggaaatcccttgcatgcaagaacttatgaacagggaggttctttggtgt--------agaggtgtggtggttgacattggcatcatgggt |
4397494 |
T |
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| Q |
118 |
agccttgtcttgatattttgttgttatttaagaggttgttgtatttcgttgttgcttttagaagtttactgctacaacaatattgttttcttgcattagc |
217 |
Q |
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| T |
4397493 |
agccttgtgttgatatttt-ttgttattttagagcttgttgtatttcgttgttgcttttagaagtttactgctacaacaatattgttttcttgcattagc |
4397395 |
T |
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| Q |
218 |
ccaattcaataacgtcttatattcagactgacgttttattaataaaatttgttgtaaagnnnnnnngttgaatttcattatttatatatatttttccttt |
317 |
Q |
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| T |
4397394 |
tcaattcaataacgtcttatattcggattgacgttttattaataaaatttgttgtagagaaaaaaagttgaatttcattatt--tatatatttttccttt |
4397297 |
T |
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| Q |
318 |
tgaatctatgtatggtttactaattcagccacctgttagcctat |
361 |
Q |
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| T |
4397296 |
tgaatttatctctggtttactaattcatccacctgttagcctat |
4397253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 66 - 272
Target Start/End: Complemental strand, 4459095 - 4458890
Alignment:
| Q |
66 |
ttctttggtgttgatttgcagaggtgtggtggttgacattggcatcatgggtagccttgtcttgatattttgttgttatttaagaggttgttgtatttcg |
165 |
Q |
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| T |
4459095 |
ttctttggtgttgatttgtagaggtgtggtggttggcattggcatcatgggtaaccttgtgttgatgcttt-ttgttatttaggaacttgttgtatttct |
4458997 |
T |
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| Q |
166 |
ttgttgcttttagaagtttactgctacaacaatattgttttcttgcattagcccaattcaataacgtcttatattcagactgacgttttattaataaaat |
265 |
Q |
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| T |
4458996 |
ttgttgcttttagaagtttacgactacaacaatattgtttttttgcattagctcaattcaataacgtcttatatttggattgacgttttattaataaaat |
4458897 |
T |
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| Q |
266 |
ttgttgt |
272 |
Q |
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| T |
4458896 |
ttgttgt |
4458890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 284 - 342
Target Start/End: Complemental strand, 4458831 - 4458775
Alignment:
| Q |
284 |
gttgaatttcattatttatatatatttttccttttgaatctatgtatggtttactaatt |
342 |
Q |
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| T |
4458831 |
gttgaatttcattatttatatat--ttttccttttgaatttatgtctggtttactaatt |
4458775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 268
Target Start/End: Complemental strand, 1026276 - 1026100
Alignment:
| Q |
92 |
tggtggttgacattggcatcatgggtagccttgtcttgatattttgttgttatttaagaggttgttgtatttcgttgttgcttttagaagtttactgcta |
191 |
Q |
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| T |
1026276 |
tggtggtggatattggcatcatgagttgccttgtgttggagtttt-ttgttatttaggtgcttgttgtgtttctttgttgctttcgggtgtttactgcta |
1026178 |
T |
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| Q |
192 |
caacaata-ttgttttcttgcattagcccaattcaataacgtcttatattcagactgacgttttattaataaaatttg |
268 |
Q |
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| || || ||||| | ||| ||| |||||||| |||| ||||||||||| || || | |||||||||||||||| |
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| T |
1026177 |
tagcagtacttgttcttttgtattggcccaatttgataatgtcttatattcggattgttgcattattaataaaatttg |
1026100 |
T |
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