View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_low_120 (Length: 365)
Name: NF20384_low_120
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_120 |
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Alignment Details
Target: chr3 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 40972951 - 40973296
Alignment:
| Q |
1 |
taatgctcatcattcaactggtttcaaattcaatataaaaggagtcgctgtaagatttccattcacgttacatcttttgttaatttactcataacttttt |
100 |
Q |
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| T |
40972951 |
taatgctcatcattcaactggtttcaaattcaatataaaaggagtcgctgtaagatt-ccattcacgttaaatcttttgttaatttactcataactttat |
40973049 |
T |
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| Q |
101 |
atttgtgtcaccattgaatcaatgttgtacatttggttattgattatttatgtaacaattttctttggcctttactagattggaaatccacttttgcaat |
200 |
Q |
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| T |
40973050 |
atttgtgtcacttttggatcaatgttgtacatttggttattgattatttatgtaacaattttctttggcctttactagattggaaatccacttttgcaat |
40973149 |
T |
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| Q |
201 |
tcaatcgtgatacgcaagcaacatatgaatattactggtcacatggaatgatttccgatgaaataggccttaccattatgaatgattgcaattttgatgc |
300 |
Q |
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| T |
40973150 |
tcagtcgtgatacgcaagcaacatatgaatattactggtcacatggaatgatttccgatgaaataggccttaccattatgaatgattgcaattttgatgc |
40973249 |
T |
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| Q |
301 |
atcttatgataacttatctaaatcatgtaaagatgccatggttgatg |
347 |
Q |
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| T |
40973250 |
atcttatgataacttatctaaatcatgtaaagatgccatggttgatg |
40973296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 176 - 339
Target Start/End: Complemental strand, 40960423 - 40960260
Alignment:
| Q |
176 |
tagattggaaatccacttttgcaattcaatcgtgatacgcaagcaacatatgaatattactggtcacatggaatgatttccgatgaaataggccttacca |
275 |
Q |
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| T |
40960423 |
tagattggaaacccacttctgaaattggatcgtgatagacaagcaacatatgaatatctctggtcacacggaatgatttcggatgaaattgttcttgcca |
40960324 |
T |
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| Q |
276 |
ttatgaatgattgcaattttgatgcatcttatgataacttatctaaatcatgtaaagatgccat |
339 |
Q |
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| T |
40960323 |
ttaggaatgattgcaattttgatgcatcttatgataacttatctaaatcatgcaaagaagccat |
40960260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 215 - 299
Target Start/End: Complemental strand, 30905162 - 30905078
Alignment:
| Q |
215 |
caagcaacatatgaatattactggtcacatggaatgatttccgatgaaataggccttaccattatgaatgattgcaattttgatg |
299 |
Q |
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| T |
30905162 |
caagcaacatatgattatttctggtcacatggaatgatttcagatgaaattggccttgccattacaaaagattgcgattttgatg |
30905078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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