View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20384_low_122 (Length: 364)
Name: NF20384_low_122
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_122 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 24 - 356
Target Start/End: Original strand, 10321007 - 10321341
Alignment:
| Q |
24 |
gactccaatttgtcacagatatatgtgatgggggtatctttattcttttgaatcaagtatatatagcacgatgacgatcccactagaaaattaattattc |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
10321007 |
gactccaatttgtcacagatatatgtgatgggggtatctttattcatttgaattaagtatatatagcacgatgacgatcccactagaaaatttattattc |
10321106 |
T |
|
| Q |
124 |
ccttgcaattaaactagtttatcatctattaaagtttttgtaaaaacatctaccnnnnnnngttttgtaaaaaattcatatattaaagtgagtattaatt |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10321107 |
ccttgcaattaaactagtttatcatctattaaagtttttgtaaaaacatctaccaaaaaaagttttgtaaaaaattcatatattaaagtgagtattaatt |
10321206 |
T |
|
| Q |
224 |
tattcttttgaccaaattaaagttaaaaatatattaacttgttttatggtggacaaactacaacacct--aagatatataaaaataaatggaaacaagaa |
321 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
10321207 |
tattcttttgaccaaattaaagttaaaaatatattaatttgttttatggtggacaaactacaacaccttatagatatataaaaataaatggaaacaagaa |
10321306 |
T |
|
| Q |
322 |
taaaaagagaaatggagcatagacaaattcttctc |
356 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
10321307 |
taaaaagagaaatggagcatagacaaattcttctc |
10321341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University